Analysis of interatomic Contacts of Structural Units in PDB entry:
5JJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JJW entry

There are 2 chains in PDB entry 5JJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 280ARG 575
B
 ALA 6TYR 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5JJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
280 291Right-handed alpha
Helix 2
AA2
A
295 305Right-handed alpha
Helix 3
AA3
A
309 324Right-handed alpha
Helix 4
AA4
A
325 341Right-handed alpha
Helix 5
AA5
A
343 357Right-handed alpha
Helix 6
AA6
A
360 375Right-handed alpha
Helix 7
AA7
A
378 392Right-handed alpha
Helix 8
AA8
A
395 410Right-handed alpha
Helix 9
AA9
A
413 431Right-handed alpha
Helix 10
AB1
A
439 465Right-handed alpha
Helix 11
AB2
A
472 487Right-handed alpha
Helix 12
AB3
A
488 502Right-handed alpha
Helix 13
AB4
A
507 522Right-handed alpha
Helix 14
AB5
A
523 538Right-handed alpha
Helix 15
AB6
A
541 557Right-handed alpha
Helix 16
AB7
A
558 574Right-handed alpha
Helix 17
AB8
B
8 21Right-handed alpha
Helix 18
AB9
B
35 46Right-handed alpha
Helix 19
AC1
B
57 61Right-handed 310
Helix 20
AC2
B
94 105Right-handed alpha
Helix 21
AC3
B
157 163Right-handed alpha
Helix 22
AC4
B
197 202Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5JJW.

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 93first strand
Strand 2
B
29 34anti-parallel
Strand 3
B
114 120anti-parallel
Strand 4
B
126 129anti-parallel
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