Analysis of interatomic Contacts of Structural Units in PDB entry:
5JK0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JK0 entry

There are 4 chains in PDB entry 5JK0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASN 362
B
 MET 1GLU 360
C
 MET 1GLU 360
D
 MET 1PHE 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 83 helices in PDB entry 5JK0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 30Right-handed alpha
Helix 2
AA2
A
37 50Right-handed alpha
Helix 3
AA3
A
53 67Right-handed alpha
Helix 4
AA4
A
69 71Right-handed 310
Helix 5
AA5
A
72 88Right-handed alpha
Helix 6
AA6
A
100 104Right-handed 310
Helix 7
AA7
A
105 117Right-handed alpha
Helix 8
AA8
A
121 143Right-handed alpha
Helix 9
AA9
A
176 190Right-handed alpha
Helix 10
AB1
A
196 211Right-handed alpha
Helix 11
AB2
A
213 219Right-handed alpha
Helix 12
AB3
A
221 223Right-handed 310
Helix 13
AB4
A
239 241Right-handed 310
Helix 14
AB5
A
253 265Right-handed alpha
Helix 15
AB6
A
284 299Right-handed alpha
Helix 16
AB7
A
307 324Right-handed alpha
Helix 17
AB8
A
325 334Right-handed alpha
Helix 18
AB9
A
337 342Right-handed alpha
Helix 19
AC1
A
343 345Right-handed 310
Helix 20
AC2
A
348 350Right-handed 310
Helix 21
AC3
A
351 357Right-handed alpha
Helix 22
AC4
B
10 30Right-handed alpha
Helix 23
AC5
B
37 48Right-handed alpha
Helix 24
AC6
B
53 67Right-handed alpha
Helix 25
AC7
B
69 74Right-handed 310
Helix 26
AC8
B
75 93Right-handed alpha
Helix 27
AC9
B
100 104Right-handed 310
Helix 28
AD1
B
105 117Right-handed alpha
Helix 29
AD2
B
121 143Right-handed alpha
Helix 30
AD3
B
176 190Right-handed alpha
Helix 31
AD4
B
196 211Right-handed alpha
Helix 32
AD5
B
213 219Right-handed alpha
Helix 33
AD6
B
221 223Right-handed 310
Helix 34
AD7
B
239 241Right-handed 310
Helix 35
AD8
B
253 265Right-handed alpha
Helix 36
AD9
B
284 300Right-handed alpha
Helix 37
AE1
B
307 324Right-handed alpha
Helix 38
AE2
B
325 334Right-handed alpha
Helix 39
AE3
B
337 342Right-handed alpha
Helix 40
AE4
B
343 345Right-handed 310
Helix 41
AE5
B
348 351Right-handed 310
Helix 42
AE6
B
352 357Right-handed alpha
Helix 43
AE7
C
10 30Right-handed alpha
Helix 44
AE8
C
37 51Right-handed alpha
Helix 45
AE9
C
53 68Right-handed alpha
Helix 46
AF1
C
69 71Right-handed 310
Helix 47
AF2
C
72 94Right-handed alpha
Helix 48
AF3
C
95 99Right-handed 310
Helix 49
AF4
C
100 104Right-handed 310
Helix 50
AF5
C
105 117Right-handed alpha
Helix 51
AF6
C
121 143Right-handed alpha
Helix 52
AF7
C
176 190Right-handed alpha
Helix 53
AF8
C
196 211Right-handed alpha
Helix 54
AF9
C
213 219Right-handed alpha
Helix 55
AG1
C
221 223Right-handed 310
Helix 56
AG2
C
253 265Right-handed alpha
Helix 57
AG3
C
284 299Right-handed alpha
Helix 58
AG4
C
307 324Right-handed alpha
Helix 59
AG5
C
325 334Right-handed alpha
Helix 60
AG6
C
337 342Right-handed alpha
Helix 61
AG7
C
343 346Right-handed 310
Helix 62
AG8
C
352 357Right-handed alpha
Helix 63
AG9
C
358 360Right-handed 310
Helix 64
AH1
D
10 30Right-handed alpha
Helix 65
AH2
D
37 48Right-handed alpha
Helix 66
AH3
D
53 68Right-handed alpha
Helix 67
AH4
D
69 71Right-handed 310
Helix 68
AH5
D
72 93Right-handed alpha
Helix 69
AH6
D
100 104Right-handed 310
Helix 70
AH7
D
105 117Right-handed alpha
Helix 71
AH8
D
121 143Right-handed alpha
Helix 72
AH9
D
176 190Right-handed alpha
Helix 73
AI1
D
196 211Right-handed alpha
Helix 74
AI2
D
213 219Right-handed alpha
Helix 75
AI3
D
221 223Right-handed 310
Helix 76
AI4
D
253 264Right-handed alpha
Helix 77
AI5
D
265 267Right-handed 310
Helix 78
AI6
D
284 300Right-handed alpha
Helix 79
AI7
D
307 324Right-handed alpha
Helix 80
AI8
D
325 334Right-handed alpha
Helix 81
AI9
D
337 342Right-handed alpha
Helix 82
AJ1
D
343 346Right-handed 310
Helix 83
AJ2
D
352 357Right-handed alpha
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There are 4 sheets in PDB entry 5JK0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 228first strand
Strand 2
A
231 237anti-parallel
Strand 3
A
243 249anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 227first strand
Strand 2
B
231 237anti-parallel
Strand 3
B
243 249anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
225 228first strand
Strand 2
C
231 237anti-parallel
Strand 3
C
243 249anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
225 228first strand
Strand 2
D
231 237anti-parallel
Strand 3
D
243 249anti-parallel
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