Analysis of interatomic Contacts of Structural Units in PDB entry:
5JK2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JK2 entry

There are 9 chains in PDB entry 5JK2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 96	ALA 229
B	GLN 96	GLY 230
C	GLN 96	HIS 228
D	GLN 96	GLY 230
E	PRO 97	GLY 230
F	PRO 97	HIS 228
G	PRO 98	ALA 229
H	PRO 98	HIS 228
I	PRO 97	GLY 230

There are 18 helices in PDB entry 5JK2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	113	Right-handed alpha
Helix 2	AA2	A	119	123	Right-handed 310
Helix 3	AA3	B	98	113	Right-handed alpha
Helix 4	AA4	B	119	124	Right-handed alpha
Helix 5	AA5	C	98	113	Right-handed alpha
Helix 6	AA6	C	119	123	Right-handed 310
Helix 7	AA7	D	98	113	Right-handed alpha
Helix 8	AA8	D	119	124	Right-handed alpha
Helix 9	AA9	E	98	113	Right-handed alpha
Helix 10	AB1	E	119	124	Right-handed alpha
Helix 11	AB2	F	98	113	Right-handed alpha
Helix 12	AB3	F	119	124	Right-handed alpha
Helix 13	AB4	G	99	112	Right-handed alpha
Helix 14	AB5	G	119	123	Right-handed 310
Helix 15	AB6	H	99	113	Right-handed alpha
Helix 16	AB7	H	119	123	Right-handed 310
Helix 17	AB8	I	98	110	Right-handed alpha
Helix 18	AB9	I	120	124	Right-handed alpha

There are 9 sheets in PDB entry 5JK2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	208	first strand
Strand 2	A	188	197	anti-parallel
Strand 3	A	200	203	anti-parallel
Strand 4	A	222	226	anti-parallel
Strand 5	A	125	129	anti-parallel
Strand 6	A	142	146	anti-parallel
Strand 7	A	151	156	anti-parallel
Strand 8	A	159	171	anti-parallel
Strand 9	A	174	181	anti-parallel
Strand 10	A	188	197	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	129	first strand
Strand 2	B	142	146	anti-parallel
Strand 3	B	151	156	anti-parallel
Strand 4	B	159	171	anti-parallel
Strand 5	B	174	181	anti-parallel
Strand 6	B	187	197	anti-parallel
Strand 7	B	200	209	anti-parallel
Strand 8	B	222	226	anti-parallel
Strand 9	B	125	129	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	125	129	first strand
Strand 2	C	142	146	anti-parallel
Strand 3	C	151	156	anti-parallel
Strand 4	C	159	171	anti-parallel
Strand 5	C	174	181	anti-parallel
Strand 6	C	187	197	anti-parallel
Strand 7	C	200	209	anti-parallel
Strand 8	C	222	226	anti-parallel
Strand 9	C	125	129	anti-parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	214	first strand
Strand 2	D	200	209	anti-parallel
Strand 3	D	222	226	anti-parallel
Strand 4	D	126	129	anti-parallel
Strand 5	D	142	146	anti-parallel
Strand 6	D	151	156	anti-parallel
Strand 7	D	159	171	anti-parallel
Strand 8	D	174	181	anti-parallel
Strand 9	D	187	197	anti-parallel
Strand 10	D	200	209	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	125	129	first strand
Strand 2	E	142	146	anti-parallel
Strand 3	E	151	156	anti-parallel
Strand 4	E	159	171	anti-parallel
Strand 5	E	174	181	anti-parallel
Strand 6	E	187	197	anti-parallel
Strand 7	E	200	209	anti-parallel
Strand 8	E	222	226	anti-parallel
Strand 9	E	125	129	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	129	first strand
Strand 2	F	142	146	anti-parallel
Strand 3	F	151	156	anti-parallel
Strand 4	F	159	171	anti-parallel
Strand 5	F	174	181	anti-parallel
Strand 6	F	187	197	anti-parallel
Strand 7	F	200	209	anti-parallel
Strand 8	F	222	226	anti-parallel
Strand 9	F	125	129	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	125	129	first strand
Strand 2	G	142	145	anti-parallel
Strand 3	G	151	156	anti-parallel
Strand 4	G	159	171	anti-parallel
Strand 5	G	174	181	anti-parallel
Strand 6	G	188	195	anti-parallel
Strand 7	G	200	208	anti-parallel
Strand 8	G	222	226	anti-parallel
Strand 9	G	125	129	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	142	146	anti-parallel
Strand 3	H	151	156	anti-parallel
Strand 4	H	159	171	anti-parallel
Strand 5	H	174	181	anti-parallel
Strand 6	H	188	197	anti-parallel
Strand 7	H	200	208	anti-parallel
Strand 8	H	222	226	anti-parallel
Strand 9	H	125	129	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	125	129	first strand
Strand 2	I	142	146	anti-parallel
Strand 3	I	151	156	anti-parallel
Strand 4	I	159	171	anti-parallel
Strand 5	I	174	181	anti-parallel
Strand 6	I	187	197	anti-parallel
Strand 7	I	200	209	anti-parallel
Strand 8	I	222	226	anti-parallel
Strand 9	I	125	129	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JK2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JK2