Analysis of interatomic Contacts of Structural Units in PDB entry:
5JK5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JK5 entry

There are 2 chains in PDB entry 5JK5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 15ASN 414
B
 GLN 15LYS 415
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5JK5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
31 46Right-handed alpha
Helix 2
AA2
A
78 89Right-handed alpha
Helix 3
AA3
A
112 120Right-handed 310
Helix 4
AA4
A
139 156Right-handed alpha
Helix 5
AA5
A
168 184Right-handed alpha
Helix 6
AA6
A
185 190Right-handed alpha
Helix 7
AA7
A
191 205Right-handed alpha
Helix 8
AA8
A
214 227Right-handed alpha
Helix 9
AA9
A
238 247Right-handed alpha
Helix 10
AB1
A
270 278Right-handed alpha
Helix 11
AB2
A
278 283Right-handed alpha
Helix 12
AB3
A
284 299Right-handed alpha
Helix 13
AB4
A
302 315Right-handed alpha
Helix 14
AB5
A
332 337Right-handed alpha
Helix 15
AB6
A
338 346Right-handed alpha
Helix 16
AB7
A
356 361Right-handed alpha
Helix 17
AB8
A
379 394Right-handed alpha
Helix 18
AB9
B
31 46Right-handed alpha
Helix 19
AC1
B
78 89Right-handed alpha
Helix 20
AC2
B
112 120Right-handed 310
Helix 21
AC3
B
139 156Right-handed alpha
Helix 22
AC4
B
168 184Right-handed alpha
Helix 23
AC5
B
185 190Right-handed alpha
Helix 24
AC6
B
191 205Right-handed alpha
Helix 25
AC7
B
214 227Right-handed alpha
Helix 26
AC8
B
238 247Right-handed alpha
Helix 27
AC9
B
270 277Right-handed alpha
Helix 28
AD1
B
277 283Right-handed alpha
Helix 29
AD2
B
284 299Right-handed alpha
Helix 30
AD3
B
302 315Right-handed alpha
Helix 31
AD4
B
332 337Right-handed alpha
Helix 32
AD5
B
338 343Right-handed alpha
Helix 33
AD6
B
356 361Right-handed alpha
Helix 34
AD7
B
379 392Right-handed alpha
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There are 8 sheets in PDB entry 5JK5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 56first strand
Strand 2
A
63 72anti-parallel
Strand 3
A
17 26anti-parallel
Strand 4
A
95 98anti-parallel
Strand 5
A
106 107parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 232first strand
Strand 2
A
250 253parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
327 330first strand
Strand 2
A
321 324anti-parallel
Strand 3
A
373 377parallel
Strand 4
A
351 354parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
398 403first strand
Strand 2
A
408 413anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 56first strand
Strand 2
B
63 72anti-parallel
Strand 3
B
17 26anti-parallel
Strand 4
B
95 98anti-parallel
Strand 5
B
106 107parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 232first strand
Strand 2
B
250 253parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 330first strand
Strand 2
B
321 324anti-parallel
Strand 3
B
373 377parallel
Strand 4
B
351 354parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
399 403first strand
Strand 2
B
408 412anti-parallel
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