Analysis of interatomic Contacts of Structural Units in PDB entry:
5JK9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JK9 entry

There are 6 chains in PDB entry 5JK9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 18	LEU 258
B	SER 19	LYS 255
C	ARG 18	PRO 254
D	ARG 18	VAL 250
E	SER 19	PRO 254
F	SER 19	LEU 117

There are 52 helices in PDB entry 5JK9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	25	Right-handed 310
Helix 2	AA2	A	26	40	Right-handed alpha
Helix 3	AA3	A	40	45	Right-handed alpha
Helix 4	AA4	A	46	48	Right-handed 310
Helix 5	AA5	A	49	63	Right-handed alpha
Helix 6	AA6	A	79	100	Right-handed alpha
Helix 7	AA7	A	103	133	Right-handed alpha
Helix 8	AA8	A	186	190	Right-handed 310
Helix 9	AA9	A	224	228	Right-handed 310
Helix 10	AB1	B	21	25	Right-handed 310
Helix 11	AB2	B	26	40	Right-handed alpha
Helix 12	AB3	B	40	45	Right-handed alpha
Helix 13	AB4	B	46	48	Right-handed 310
Helix 14	AB5	B	49	62	Right-handed alpha
Helix 15	AB6	B	79	101	Right-handed alpha
Helix 16	AB7	B	103	133	Right-handed alpha
Helix 17	AB8	B	186	190	Right-handed 310
Helix 18	AB9	B	224	228	Right-handed 310
Helix 19	AC1	C	21	25	Right-handed 310
Helix 20	AC2	C	26	40	Right-handed alpha
Helix 21	AC3	C	40	45	Right-handed alpha
Helix 22	AC4	C	46	48	Right-handed 310
Helix 23	AC5	C	49	63	Right-handed alpha
Helix 24	AC6	C	79	101	Right-handed alpha
Helix 25	AC7	C	103	133	Right-handed alpha
Helix 26	AC8	C	186	190	Right-handed 310
Helix 27	AC9	C	224	228	Right-handed 310
Helix 28	AD1	D	21	25	Right-handed 310
Helix 29	AD2	D	26	40	Right-handed alpha
Helix 30	AD3	D	40	45	Right-handed alpha
Helix 31	AD4	D	46	48	Right-handed 310
Helix 32	AD5	D	49	63	Right-handed alpha
Helix 33	AD6	D	79	101	Right-handed alpha
Helix 34	AD7	D	103	133	Right-handed alpha
Helix 35	AD8	E	21	25	Right-handed 310
Helix 36	AD9	E	26	40	Right-handed alpha
Helix 37	AE1	E	40	45	Right-handed alpha
Helix 38	AE2	E	46	48	Right-handed 310
Helix 39	AE3	E	49	62	Right-handed alpha
Helix 40	AE4	E	79	101	Right-handed alpha
Helix 41	AE5	E	103	133	Right-handed alpha
Helix 42	AE6	E	184	188	Right-handed 310
Helix 43	AE7	E	224	228	Right-handed 310
Helix 44	AE8	F	21	25	Right-handed 310
Helix 45	AE9	F	26	40	Right-handed alpha
Helix 46	AF1	F	40	45	Right-handed alpha
Helix 47	AF2	F	46	48	Right-handed 310
Helix 48	AF3	F	49	63	Right-handed alpha
Helix 49	AF4	F	79	101	Right-handed alpha
Helix 50	AF5	F	103	133	Right-handed alpha
Helix 51	AF6	F	184	190	Right-handed 310
Helix 52	AF7	F	224	228	Right-handed 310

There are 17 sheets in PDB entry 5JK9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	78	first strand
Strand 2	A	141	148	anti-parallel
Strand 3	A	154	160	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	173	first strand
Strand 2	A	244	253	parallel
Strand 3	A	229	237	anti-parallel
Strand 4	A	193	201	anti-parallel
Strand 5	A	207	213	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	181	first strand
Strand 2	A	217	220	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	78	first strand
Strand 2	B	141	148	anti-parallel
Strand 3	B	154	160	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	173	first strand
Strand 2	B	244	253	parallel
Strand 3	B	229	237	anti-parallel
Strand 4	B	193	201	anti-parallel
Strand 5	B	207	213	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	181	first strand
Strand 2	B	217	220	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	C	141	148	anti-parallel
Strand 3	C	154	160	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	173	first strand
Strand 2	C	244	253	parallel
Strand 3	C	229	237	anti-parallel
Strand 4	C	193	201	anti-parallel
Strand 5	C	207	213	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	178	181	first strand
Strand 2	C	217	220	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	141	148	anti-parallel
Strand 3	D	154	160	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	207	213	first strand
Strand 2	D	193	201	anti-parallel
Strand 3	D	231	237	anti-parallel
Strand 4	D	244	247	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	78	first strand
Strand 2	E	141	148	anti-parallel
Strand 3	E	154	160	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	173	first strand
Strand 2	E	244	253	parallel
Strand 3	E	229	237	anti-parallel
Strand 4	E	193	201	anti-parallel
Strand 5	E	207	213	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	178	181	first strand
Strand 2	E	217	220	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	78	first strand
Strand 2	F	141	148	anti-parallel
Strand 3	F	154	160	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	168	173	first strand
Strand 2	F	244	253	parallel
Strand 3	F	229	237	anti-parallel
Strand 4	F	193	201	anti-parallel
Strand 5	F	209	213	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	178	181	first strand
Strand 2	F	217	220	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JK9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JK9