Analysis of interatomic Contacts of Structural Units in PDB entry:
5JKF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JKF entry

There are 2 chains in PDB entry 5JKF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 25ASN 393
B
 MET 25GLU 392
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 5JKF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
140 144Right-handed 310
Helix 2
AA2
A
148 163Right-handed alpha
Helix 3
AA3
A
175 188Right-handed alpha
Helix 4
AA4
A
189 192Right-handed 310
Helix 5
AA5
A
205 222Right-handed alpha
Helix 6
AA6
A
223 229Right-handed 310
Helix 7
AA7
A
231 235Right-handed 310
Helix 8
AA8
A
236 251Right-handed alpha
Helix 9
AA9
A
253 264Right-handed alpha
Helix 10
AB1
A
270 276Right-handed alpha
Helix 11
AB2
A
281 295Right-handed alpha
Helix 12
AB3
A
299 312Right-handed alpha
Helix 13
AB4
A
320 327Right-handed alpha
Helix 14
AB5
A
344 358Right-handed alpha
Helix 15
AB6
A
371 373Right-handed 310
Helix 16
AB7
A
374 379Right-handed alpha
Helix 17
AB8
A
380 382Right-handed 310
Helix 18
AB9
A
383 392Right-handed alpha
Helix 19
AC1
B
91 93Right-handed 310
Helix 20
AC2
B
140 144Right-handed 310
Helix 21
AC3
B
148 162Right-handed alpha
Helix 22
AC4
B
175 188Right-handed alpha
Helix 23
AC5
B
189 192Right-handed 310
Helix 24
AC6
B
205 222Right-handed alpha
Helix 25
AC7
B
223 229Right-handed 310
Helix 26
AC8
B
236 251Right-handed alpha
Helix 27
AC9
B
253 265Right-handed alpha
Helix 28
AD1
B
270 276Right-handed alpha
Helix 29
AD2
B
281 295Right-handed alpha
Helix 30
AD3
B
299 312Right-handed alpha
Helix 31
AD4
B
314 318Right-handed 310
Helix 32
AD5
B
320 327Right-handed alpha
Helix 33
AD6
B
344 358Right-handed alpha
Helix 34
AD7
B
371 373Right-handed 310
Helix 35
AD8
B
374 379Right-handed alpha
Helix 36
AD9
B
380 382Right-handed 310
Helix 37
AE1
B
383 392Right-handed alpha
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There are 4 sheets in PDB entry 5JKF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 37first strand
Strand 2
A
43 54anti-parallel
Strand 3
A
107 111anti-parallel
Strand 4
A
64 67parallel
Strand 5
A
170 174parallel
Strand 6
A
194 198parallel
Strand 7
A
331 335parallel
Strand 8
A
362 364parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
101 102parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 37first strand
Strand 2
B
43 54anti-parallel
Strand 3
B
107 111anti-parallel
Strand 4
B
64 67parallel
Strand 5
B
170 174parallel
Strand 6
B
194 198parallel
Strand 7
B
331 335parallel
Strand 8
B
362 364parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 96first strand
Strand 2
B
101 102parallel
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