Analysis of interatomic Contacts of Structural Units in PDB entry:
5JKR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JKR entry

There are 4 chains in PDB entry 5JKR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLN -2TYR 218
D
 ALA 0VAL 50
A
 PRO 0TYR 218
C
 ALA 0VAL 50
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5JKR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
18 21Right-handed 310
Helix 2
AA2
B
22 39Right-handed alpha
Helix 3
AA3
B
45 49Right-handed 310
Helix 4
AA4
B
50 55Right-handed 310
Helix 5
AA5
B
86 101Right-handed alpha
Helix 6
AA6
B
110 113Right-handed 310
Helix 7
AA7
B
133 152Right-handed alpha
Helix 8
AA8
B
165 170Right-handed 310
Helix 9
AA9
B
184 188Right-handed 310
Helix 10
AB1
B
193 204Right-handed alpha
Helix 11
AB2
B
211 214Right-handed 310
Helix 12
AB3
D
3 20Right-handed alpha
Helix 13
AB4
D
24 43Right-handed alpha
Helix 14
AB5
A
19 40Right-handed alpha
Helix 15
AB6
A
45 49Right-handed 310
Helix 16
AB7
A
50 55Right-handed 310
Helix 17
AB8
A
86 101Right-handed alpha
Helix 18
AB9
A
110 113Right-handed 310
Helix 19
AC1
A
133 149Right-handed alpha
Helix 20
AC2
A
165 170Right-handed 310
Helix 21
AC3
A
193 204Right-handed alpha
Helix 22
AC4
A
211 214Right-handed 310
Helix 23
AC5
C
3 19Right-handed alpha
Helix 24
AC6
C
24 43Right-handed alpha
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There are 8 sheets in PDB entry 5JKR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 5first strand
Strand 2
B
12 16anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 43first strand
Strand 2
B
125 126anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 120first strand
Strand 2
B
62 66parallel
Strand 3
B
154 158parallel
Strand 4
B
175 179parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
216 217anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 5first strand
Strand 2
A
12 16anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
125 126anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 120first strand
Strand 2
A
62 66parallel
Strand 3
A
154 158parallel
Strand 4
A
175 179parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
216 217anti-parallel
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