Analysis of interatomic Contacts of Structural Units in PDB entry:
5JLA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JLA entry

There are 4 chains in PDB entry 5JLA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 3	GLU 261
B	ALA 3	ARG 260
C	ALA 3	ARG 260
D	ALA 3	GLU 261

There are 52 helices in PDB entry 5JLA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	32	Right-handed alpha
Helix 2	AA2	A	42	54	Right-handed alpha
Helix 3	AA3	A	64	79	Right-handed alpha
Helix 4	AA4	A	102	114	Right-handed alpha
Helix 5	AA5	A	114	132	Right-handed alpha
Helix 6	AA6	A	141	145	Right-handed 310
Helix 7	AA7	A	152	172	Right-handed alpha
Helix 8	AA8	A	188	196	Right-handed alpha
Helix 9	AA9	A	201	208	Right-handed alpha
Helix 10	AB1	A	217	229	Right-handed alpha
Helix 11	AB2	A	230	233	Right-handed 310
Helix 12	AB3	A	245	250	Right-handed alpha
Helix 13	AB4	A	251	256	Right-handed 310
Helix 14	AB5	B	19	32	Right-handed alpha
Helix 15	AB6	B	42	54	Right-handed alpha
Helix 16	AB7	B	64	79	Right-handed alpha
Helix 17	AB8	B	102	114	Right-handed alpha
Helix 18	AB9	B	114	132	Right-handed alpha
Helix 19	AC1	B	141	145	Right-handed 310
Helix 20	AC2	B	152	172	Right-handed alpha
Helix 21	AC3	B	188	197	Right-handed alpha
Helix 22	AC4	B	201	208	Right-handed alpha
Helix 23	AC5	B	217	229	Right-handed alpha
Helix 24	AC6	B	230	233	Right-handed 310
Helix 25	AC7	B	245	250	Right-handed alpha
Helix 26	AC8	B	251	256	Right-handed 310
Helix 27	AC9	C	19	32	Right-handed alpha
Helix 28	AD1	C	42	54	Right-handed alpha
Helix 29	AD2	C	64	79	Right-handed alpha
Helix 30	AD3	C	102	114	Right-handed alpha
Helix 31	AD4	C	114	132	Right-handed alpha
Helix 32	AD5	C	141	145	Right-handed 310
Helix 33	AD6	C	152	172	Right-handed alpha
Helix 34	AD7	C	188	197	Right-handed alpha
Helix 35	AD8	C	201	208	Right-handed alpha
Helix 36	AD9	C	217	229	Right-handed alpha
Helix 37	AE1	C	230	233	Right-handed 310
Helix 38	AE2	C	245	250	Right-handed alpha
Helix 39	AE3	C	251	256	Right-handed 310
Helix 40	AE4	D	19	32	Right-handed alpha
Helix 41	AE5	D	42	54	Right-handed alpha
Helix 42	AE6	D	64	79	Right-handed alpha
Helix 43	AE7	D	102	114	Right-handed alpha
Helix 44	AE8	D	114	132	Right-handed alpha
Helix 45	AE9	D	141	145	Right-handed 310
Helix 46	AF1	D	152	172	Right-handed alpha
Helix 47	AF2	D	188	197	Right-handed alpha
Helix 48	AF3	D	201	208	Right-handed alpha
Helix 49	AF4	D	217	229	Right-handed alpha
Helix 50	AF5	D	230	233	Right-handed 310
Helix 51	AF6	D	245	250	Right-handed alpha
Helix 52	AF7	D	251	256	Right-handed 310

There are 8 sheets in PDB entry 5JLA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	59	first strand
Strand 2	A	35	40	parallel
Strand 3	A	11	15	parallel
Strand 4	A	84	87	parallel
Strand 5	A	134	139	parallel
Strand 6	A	176	183	parallel
Strand 7	A	239	242	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	187	first strand
Strand 2	A	215	216	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	59	first strand
Strand 2	B	35	40	parallel
Strand 3	B	11	15	parallel
Strand 4	B	84	87	parallel
Strand 5	B	134	139	parallel
Strand 6	B	176	183	parallel
Strand 7	B	239	242	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	187	first strand
Strand 2	B	215	216	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	59	first strand
Strand 2	C	35	40	parallel
Strand 3	C	11	15	parallel
Strand 4	C	84	87	parallel
Strand 5	C	134	139	parallel
Strand 6	C	176	183	parallel
Strand 7	C	239	242	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	187	first strand
Strand 2	C	215	216	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	59	first strand
Strand 2	D	35	40	parallel
Strand 3	D	11	15	parallel
Strand 4	D	84	87	parallel
Strand 5	D	134	139	parallel
Strand 6	D	176	183	parallel
Strand 7	D	239	242	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	186	187	first strand
Strand 2	D	215	216	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JLA

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JLA