Analysis of interatomic Contacts of Structural Units in PDB entry:
5JLC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JLC entry

There is 1 chain in PDB entry 5JLC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 20GLY 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5JLC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 26Right-handed 310
Helix 2
AA2
A
27 51Right-handed alpha
Helix 3
AA3
A
69 76Right-handed alpha
Helix 4
AA4
A
76 89Right-handed alpha
Helix 5
AA5
A
105 115Right-handed alpha
Helix 6
AA6
A
123 136Right-handed alpha
Helix 7
AA7
A
144 157Right-handed alpha
Helix 8
AA8
A
160 182Right-handed alpha
Helix 9
AA9
A
197 214Right-handed alpha
Helix 10
AB1
A
215 222Right-handed alpha
Helix 11
AB2
A
223 225Right-handed 310
Helix 12
AB3
A
226 236Right-handed alpha
Helix 13
AB4
A
239 244Right-handed alpha
Helix 14
AB5
A
249 277Right-handed alpha
Helix 15
AB6
A
283 291Right-handed alpha
Helix 16
AB7
A
301 333Right-handed alpha
Helix 17
AB8
A
334 349Right-handed alpha
Helix 18
AB9
A
357 363Right-handed alpha
Helix 19
AC1
A
364 378Right-handed alpha
Helix 20
AC2
A
410 416Right-handed alpha
Helix 21
AC3
A
428 433Right-handed 310
Helix 22
AC4
A
467 471Right-handed 310
Helix 23
AC5
A
474 492Right-handed alpha
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There are 5 sheets in PDB entry 5JLC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
91 96first strand
Strand 2
A
99 104anti-parallel
Strand 3
A
406 409parallel
Strand 4
A
384 388anti-parallel
Strand 5
A
121 122anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 196first strand
Strand 2
A
521 526anti-parallel
Strand 3
A
493 496anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 393first strand
Strand 2
A
400 401anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 448first strand
Strand 2
A
453 455anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
507 508first strand
Strand 2
A
515 516anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il