Analysis of interatomic Contacts of Structural Units in PDB entry:
5JLD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JLD entry

There is 1 chain in PDB entry 5JLD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1LEU 590
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5JLD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 23Right-handed alpha
Helix 2
AA2
A
45 55Right-handed alpha
Helix 3
AA3
A
62 73Right-handed alpha
Helix 4
AA4
A
95 106Right-handed alpha
Helix 5
AA5
A
117 122Right-handed 310
Helix 6
AA6
A
145 165Right-handed alpha
Helix 7
AA7
A
181 192Right-handed alpha
Helix 8
AA8
A
205 217Right-handed alpha
Helix 9
AA9
A
229 236Right-handed alpha
Helix 10
AB1
A
238 263Right-handed alpha
Helix 11
AB2
A
271 277Right-handed 310
Helix 12
AB3
A
278 290Right-handed alpha
Helix 13
AB4
A
322 335Right-handed alpha
Helix 14
AB5
A
349 362Right-handed alpha
Helix 15
AB6
A
397 418Right-handed alpha
Helix 16
AB7
A
427 431Right-handed 310
Helix 17
AB8
A
432 451Right-handed alpha
Helix 18
AB9
A
461 467Right-handed alpha
Helix 19
AC1
A
472 490Right-handed alpha
Helix 20
AC2
A
493 497Right-handed 310
Helix 21
AC3
A
498 502Right-handed 310
Helix 22
AC4
A
506 518Right-handed alpha
Helix 23
AC5
A
518 530Right-handed alpha
Helix 24
AC6
A
532 554Right-handed alpha
Helix 25
AC7
A
557 559Right-handed 310
Helix 26
AC8
A
560 582Right-handed alpha
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There are 4 sheets in PDB entry 5JLD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 34first strand
Strand 2
A
42 44anti-parallel
Strand 3
A
90 94anti-parallel
Strand 4
A
79 83anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
111 112anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
268 269first strand
Strand 2
A
168 173parallel
Strand 3
A
130 134parallel
Strand 4
A
340 346parallel
Strand 5
A
371 377parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
293 295first strand
Strand 2
A
298 301anti-parallel
Strand 3
A
310 313anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il