Analysis of interatomic Contacts of Structural Units in PDB entry:
5JLH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JLH entry

There are 11 chains in PDB entry 5JLH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 1	PHE 374
B	GLU 1	PHE 374
C	GLU 1	PHE 374
D	GLU 1	PHE 374
E	GLU 1	PHE 374
F	TRP 50	VAL 816
G	TRP 50	VAL 816
H	UNK 62	UNK 196
I	UNK 62	UNK 196
J	UNK 62	UNK 196
K	UNK 62	UNK 196

There are163 helices in PDB entry 5JLH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	60	Right-handed alpha
Helix 2	AA2	A	77	92	Right-handed alpha
Helix 3	AA3	A	96	100	Right-handed 310
Helix 4	AA4	A	111	125	Right-handed alpha
Helix 5	AA5	A	136	145	Right-handed alpha
Helix 6	AA6	A	180	194	Right-handed alpha
Helix 7	AA7	A	201	215	Right-handed alpha
Helix 8	AA8	A	221	229	Right-handed alpha
Helix 9	AA9	A	251	259	Right-handed alpha
Helix 10	AB1	A	260	262	Right-handed 310
Helix 11	AB2	A	272	284	Right-handed alpha
Helix 12	AB3	A	288	295	Right-handed alpha
Helix 13	AB4	A	300	304	Right-handed 310
Helix 14	AB5	A	307	320	Right-handed alpha
Helix 15	AB6	A	333	335	Right-handed 310
Helix 16	AB7	A	336	348	Right-handed alpha
Helix 17	AB8	A	349	354	Right-handed 310
Helix 18	AB9	A	358	365	Right-handed alpha
Helix 19	AC1	A	367	373	Right-handed alpha
Helix 20	AC2	B	54	60	Right-handed alpha
Helix 21	AC3	B	77	92	Right-handed alpha
Helix 22	AC4	B	96	100	Right-handed 310
Helix 23	AC5	B	111	125	Right-handed alpha
Helix 24	AC6	B	136	144	Right-handed alpha
Helix 25	AC7	B	180	194	Right-handed alpha
Helix 26	AC8	B	201	215	Right-handed alpha
Helix 27	AC9	B	221	229	Right-handed alpha
Helix 28	AD1	B	251	259	Right-handed alpha
Helix 29	AD2	B	260	262	Right-handed 310
Helix 30	AD3	B	272	284	Right-handed alpha
Helix 31	AD4	B	288	295	Right-handed alpha
Helix 32	AD5	B	300	304	Right-handed 310
Helix 33	AD6	B	307	320	Right-handed alpha
Helix 34	AD7	B	333	335	Right-handed 310
Helix 35	AD8	B	336	348	Right-handed alpha
Helix 36	AD9	B	349	354	Right-handed 310
Helix 37	AE1	B	358	365	Right-handed alpha
Helix 38	AE2	B	367	373	Right-handed alpha
Helix 39	AE3	C	55	60	Right-handed alpha
Helix 40	AE4	C	77	92	Right-handed alpha
Helix 41	AE5	C	96	100	Right-handed 310
Helix 42	AE6	C	111	125	Right-handed alpha
Helix 43	AE7	C	136	144	Right-handed alpha
Helix 44	AE8	C	180	194	Right-handed alpha
Helix 45	AE9	C	201	215	Right-handed alpha
Helix 46	AF1	C	221	229	Right-handed alpha
Helix 47	AF2	C	251	259	Right-handed alpha
Helix 48	AF3	C	260	262	Right-handed 310
Helix 49	AF4	C	272	284	Right-handed alpha
Helix 50	AF5	C	288	295	Right-handed alpha
Helix 51	AF6	C	300	304	Right-handed 310
Helix 52	AF7	C	307	320	Right-handed alpha
Helix 53	AF8	C	333	335	Right-handed 310
Helix 54	AF9	C	336	348	Right-handed alpha
Helix 55	AG1	C	349	354	Right-handed 310
Helix 56	AG2	C	358	365	Right-handed alpha
Helix 57	AG3	C	367	373	Right-handed alpha
Helix 58	AG4	D	54	60	Right-handed alpha
Helix 59	AG5	D	77	92	Right-handed alpha
Helix 60	AG6	D	96	100	Right-handed 310
Helix 61	AG7	D	111	125	Right-handed alpha
Helix 62	AG8	D	136	144	Right-handed alpha
Helix 63	AG9	D	180	194	Right-handed alpha
Helix 64	AH1	D	201	215	Right-handed alpha
Helix 65	AH2	D	221	229	Right-handed alpha
Helix 66	AH3	D	251	259	Right-handed alpha
Helix 67	AH4	D	260	262	Right-handed 310
Helix 68	AH5	D	272	284	Right-handed alpha
Helix 69	AH6	D	288	295	Right-handed alpha
Helix 70	AH7	D	300	304	Right-handed 310
Helix 71	AH8	D	307	320	Right-handed alpha
Helix 72	AH9	D	333	335	Right-handed 310
Helix 73	AI1	D	336	348	Right-handed alpha
Helix 74	AI2	D	349	354	Right-handed 310
Helix 75	AI3	D	358	365	Right-handed alpha
Helix 76	AI4	D	367	373	Right-handed alpha
Helix 77	AI5	E	54	60	Right-handed alpha
Helix 78	AI6	E	77	92	Right-handed alpha
Helix 79	AI7	E	96	100	Right-handed 310
Helix 80	AI8	E	111	125	Right-handed alpha
Helix 81	AI9	E	136	144	Right-handed alpha
Helix 82	AJ1	E	180	194	Right-handed alpha
Helix 83	AJ2	E	201	215	Right-handed alpha
Helix 84	AJ3	E	221	229	Right-handed alpha
Helix 85	AJ4	E	251	259	Right-handed alpha
Helix 86	AJ5	E	260	262	Right-handed 310
Helix 87	AJ6	E	272	284	Right-handed alpha
Helix 88	AJ7	E	288	295	Right-handed alpha
Helix 89	AJ8	E	300	304	Right-handed 310
Helix 90	AJ9	E	307	320	Right-handed alpha
Helix 91	AK1	E	333	335	Right-handed 310
Helix 92	AK2	E	336	348	Right-handed alpha
Helix 93	AK3	E	349	354	Right-handed 310
Helix 94	AK4	E	358	365	Right-handed alpha
Helix 95	AK5	E	367	373	Right-handed alpha
Helix 96	AK6	F	94	96	Right-handed 310
Helix 97	AK7	F	109	113	Right-handed 310
Helix 98	AK8	F	117	132	Right-handed alpha
Helix 99	AK9	F	155	163	Right-handed alpha
Helix 100	AL1	F	173	189	Right-handed alpha
Helix 101	AL2	F	203	219	Right-handed alpha
Helix 102	AL3	F	236	249	Right-handed alpha
Helix 103	AL4	F	288	293	Right-handed alpha
Helix 104	AL5	F	301	311	Right-handed alpha
Helix 105	AL6	F	312	320	Right-handed alpha
Helix 106	AL7	F	323	327	Right-handed 310
Helix 107	AL8	F	342	356	Right-handed alpha
Helix 108	AL9	F	358	375	Right-handed alpha
Helix 109	AM1	F	393	404	Right-handed alpha
Helix 110	AM2	F	407	417	Right-handed alpha
Helix 111	AM3	F	432	463	Right-handed alpha
Helix 112	AM4	F	489	521	Right-handed alpha
Helix 113	AM5	F	529	533	Right-handed 310
Helix 114	AM6	F	534	543	Right-handed alpha
Helix 115	AM7	F	549	560	Right-handed alpha
Helix 116	AM8	F	564	576	Right-handed alpha
Helix 117	AM9	F	609	615	Right-handed alpha
Helix 118	AN1	F	619	628	Right-handed alpha
Helix 119	AN2	F	631	638	Right-handed alpha
Helix 120	AN3	F	669	688	Right-handed alpha
Helix 121	AN4	F	708	719	Right-handed alpha
Helix 122	AN5	F	720	729	Right-handed alpha
Helix 123	AN6	F	738	746	Right-handed alpha
Helix 124	AN7	F	747	749	Right-handed 310
Helix 125	AN8	F	760	771	Right-handed alpha
Helix 126	AN9	F	774	776	Right-handed 310
Helix 127	AO1	F	790	816	Right-handed alpha
Helix 128	AO2	G	94	96	Right-handed 310
Helix 129	AO3	G	109	113	Right-handed 310
Helix 130	AO4	G	117	132	Right-handed alpha
Helix 131	AO5	G	155	163	Right-handed alpha
Helix 132	AO6	G	173	189	Right-handed alpha
Helix 133	AO7	G	203	219	Right-handed alpha
Helix 134	AO8	G	236	249	Right-handed alpha
Helix 135	AO9	G	288	293	Right-handed alpha
Helix 136	AP1	G	301	311	Right-handed alpha
Helix 137	AP2	G	312	320	Right-handed alpha
Helix 138	AP3	G	323	327	Right-handed 310
Helix 139	AP4	G	342	356	Right-handed alpha
Helix 140	AP5	G	358	375	Right-handed alpha
Helix 141	AP6	G	393	404	Right-handed alpha
Helix 142	AP7	G	407	417	Right-handed alpha
Helix 143	AP8	G	432	463	Right-handed alpha
Helix 144	AP9	G	489	521	Right-handed alpha
Helix 145	AQ1	G	529	533	Right-handed 310
Helix 146	AQ2	G	534	543	Right-handed alpha
Helix 147	AQ3	G	549	560	Right-handed alpha
Helix 148	AQ4	G	564	576	Right-handed alpha
Helix 149	AQ5	G	609	615	Right-handed alpha
Helix 150	AQ6	G	619	628	Right-handed alpha
Helix 151	AQ7	G	631	638	Right-handed alpha
Helix 152	AQ8	G	669	688	Right-handed alpha
Helix 153	AQ9	G	708	719	Right-handed alpha
Helix 154	AR1	G	720	729	Right-handed alpha
Helix 155	AR2	G	738	746	Right-handed alpha
Helix 156	AR3	G	747	749	Right-handed 310
Helix 157	AR4	G	760	771	Right-handed alpha
Helix 158	AR5	G	774	776	Right-handed 310
Helix 159	AR6	G	790	816	Right-handed alpha
Helix 160	AR7	H	63	196	Right-handed alpha
Helix 161	AR8	I	63	196	Right-handed alpha
Helix 162	AR9	J	63	196	Right-handed alpha
Helix 163	AS1	K	63	196	Right-handed alpha

There are 37 sheets in PDB entry 5JLH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	15	20	anti-parallel
Strand 3	A	7	10	anti-parallel
Strand 4	A	102	106	parallel
Strand 5	A	130	135	parallel
Strand 6	A	356	357	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	53	first strand
Strand 2	A	34	37	anti-parallel
Strand 3	A	64	67	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	74	75	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	177	first strand
Strand 2	A	159	164	anti-parallel
Strand 3	A	149	154	anti-parallel
Strand 4	A	296	299	parallel
Strand 5	A	328	329	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	240	first strand
Strand 2	A	246	249	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	15	20	anti-parallel
Strand 3	B	7	10	anti-parallel
Strand 4	B	102	106	parallel
Strand 5	B	130	135	parallel
Strand 6	B	356	357	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	34	37	anti-parallel
Strand 3	B	64	67	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	71	first strand
Strand 2	B	74	75	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	159	164	anti-parallel
Strand 3	B	149	154	anti-parallel
Strand 4	B	296	299	parallel
Strand 5	B	328	329	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	240	first strand
Strand 2	B	246	249	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	31	first strand
Strand 2	C	15	20	anti-parallel
Strand 3	C	7	10	anti-parallel
Strand 4	C	102	106	parallel
Strand 5	C	130	135	parallel
Strand 6	C	356	357	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	34	37	anti-parallel
Strand 3	C	64	67	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	74	75	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	159	164	anti-parallel
Strand 3	C	149	154	anti-parallel
Strand 4	C	296	299	parallel
Strand 5	C	328	329	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	240	first strand
Strand 2	C	246	249	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	31	first strand
Strand 2	D	15	20	anti-parallel
Strand 3	D	7	10	anti-parallel
Strand 4	D	102	106	parallel
Strand 5	D	130	135	parallel
Strand 6	D	356	357	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	52	53	first strand
Strand 2	D	34	37	anti-parallel
Strand 3	D	64	67	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	70	71	first strand
Strand 2	D	74	75	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	177	first strand
Strand 2	D	159	164	anti-parallel
Strand 3	D	149	154	anti-parallel
Strand 4	D	296	299	parallel
Strand 5	D	328	329	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	240	first strand
Strand 2	D	246	249	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	31	first strand
Strand 2	E	15	20	anti-parallel
Strand 3	E	7	10	anti-parallel
Strand 4	E	102	106	parallel
Strand 5	E	130	135	parallel
Strand 6	E	356	357	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	52	53	first strand
Strand 2	E	34	37	anti-parallel
Strand 3	E	64	67	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	71	first strand
Strand 2	E	74	75	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	175	177	first strand
Strand 2	E	159	164	anti-parallel
Strand 3	E	149	154	anti-parallel
Strand 4	E	296	299	parallel
Strand 5	E	328	329	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	237	240	first strand
Strand 2	E	246	249	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	88	92	first strand
Strand 2	F	77	82	anti-parallel
Strand 3	F	65	74	anti-parallel
Strand 4	F	55	59	anti-parallel
Strand 5	F	97	98	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	138	first strand
Strand 2	F	141	145	anti-parallel
Strand 3	F	689	696	parallel
Strand 4	F	192	197	parallel
Strand 5	F	472	479	parallel
Strand 6	F	264	270	anti-parallel
Strand 7	F	276	282	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	250	251	first strand
Strand 2	F	259	260	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	420	422	first strand
Strand 2	F	425	427	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	582	583	first strand
Strand 2	F	594	597	anti-parallel
Strand 3	F	602	605	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	734	737	first strand
Strand 2	F	784	787	anti-parallel
Strand 3	F	778	780	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	88	92	first strand
Strand 2	G	77	82	anti-parallel
Strand 3	G	65	74	anti-parallel
Strand 4	G	55	59	anti-parallel
Strand 5	G	97	98	anti-parallel

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There are 7 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	135	138	first strand
Strand 2	G	141	145	anti-parallel
Strand 3	G	689	696	parallel
Strand 4	G	192	197	parallel
Strand 5	G	472	479	parallel
Strand 6	G	264	270	anti-parallel
Strand 7	G	276	282	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	250	251	first strand
Strand 2	G	259	260	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	420	422	first strand
Strand 2	G	425	427	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	582	583	first strand
Strand 2	G	594	597	anti-parallel
Strand 3	G	602	605	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	734	737	first strand
Strand 2	G	784	787	anti-parallel
Strand 3	G	778	780	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JLH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JLH