Analysis of interatomic Contacts of Structural Units in PDB entry:
5JLT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JLT entry

There are 8 chains in PDB entry 5JLT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 98LEU 211
B
 ARG 104LEU 211
C
 LYS 102LEU 211
D
 ILE 106LEU 211
E
 G 1 C 22
F
 G 1 C 22
G
 G 1 C 22
H
 G 1 C 22
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5JLT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
107 124Right-handed alpha
Helix 2
AA2
A
168 177Right-handed alpha
Helix 3
AA3
A
197 210Right-handed alpha
Helix 4
AA4
B
109 124Right-handed alpha
Helix 5
AA5
B
168 178Right-handed alpha
Helix 6
AA6
B
199 211Right-handed alpha
Helix 7
AA7
C
107 124Right-handed alpha
Helix 8
AA8
C
168 177Right-handed alpha
Helix 9
AA9
C
197 210Right-handed alpha
Helix 10
AB1
D
109 124Right-handed alpha
Helix 11
AB2
D
168 177Right-handed alpha
Helix 12
AB3
D
197 211Right-handed alpha
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There are 4 sheets in PDB entry 5JLT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 133first strand
Strand 2
A
138 146anti-parallel
Strand 3
A
149 154anti-parallel
Strand 4
A
159 165anti-parallel
Strand 5
A
189 195anti-parallel
Strand 6
A
181 184anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 134first strand
Strand 2
B
137 146anti-parallel
Strand 3
B
149 154anti-parallel
Strand 4
B
159 165anti-parallel
Strand 5
B
189 195anti-parallel
Strand 6
B
181 184anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
128 134first strand
Strand 2
C
137 146anti-parallel
Strand 3
C
149 154anti-parallel
Strand 4
C
159 165anti-parallel
Strand 5
C
189 195anti-parallel
Strand 6
C
181 184anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
128 134first strand
Strand 2
D
137 146anti-parallel
Strand 3
D
149 154anti-parallel
Strand 4
D
159 165anti-parallel
Strand 5
D
189 195anti-parallel
Strand 6
D
181 184anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il