Analysis of interatomic Contacts of Structural Units in PDB entry:
5JLV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JLV entry

There are 4 chains in PDB entry 5JLV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 870	LEU 1296
B	PRO 870	LEU 1296
C	GLU 470	LYS 566
D	GLU 474	HIS 564

There are 15 helices in PDB entry 5JLV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	871	876	Right-handed alpha
Helix 2	AA2	A	929	933	Right-handed 310
Helix 3	AA3	A	954	958	Right-handed 310
Helix 4	AA4	A	1080	1091	Right-handed alpha
Helix 5	AA5	A	1210	1214	Right-handed 310
Helix 6	AA6	A	1266	1270	Right-handed 310
Helix 7	AA7	A	1274	1280	Right-handed 310
Helix 8	AA8	B	871	876	Right-handed alpha
Helix 9	AA9	B	929	933	Right-handed 310
Helix 10	AB1	B	954	958	Right-handed 310
Helix 11	AB2	B	1080	1093	Right-handed alpha
Helix 12	AB3	B	1210	1214	Right-handed 310
Helix 13	AB4	B	1274	1280	Right-handed 310
Helix 14	AB5	C	548	550	Right-handed 310
Helix 15	AB6	D	548	550	Right-handed 310

There are 23 sheets in PDB entry 5JLV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	887	890	first strand
Strand 2	A	879	884	anti-parallel
Strand 3	A	1066	1075	anti-parallel
Strand 4	A	910	917	anti-parallel
Strand 5	A	905	907	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	887	890	first strand
Strand 2	A	879	884	anti-parallel
Strand 3	A	1066	1075	anti-parallel
Strand 4	A	941	948	anti-parallel
Strand 5	A	1015	1021	anti-parallel
Strand 6	A	1026	1031	anti-parallel
Strand 7	A	1034	1040	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	897	900	first strand
Strand 2	A	924	927	anti-parallel
Strand 3	A	1052	1058	anti-parallel
Strand 4	A	962	969	anti-parallel
Strand 5	A	972	979	anti-parallel
Strand 6	A	982	988	anti-parallel
Strand 7	A	994	1000	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	935	936	first strand
Strand 2	A	1047	1048	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1204	1205	first strand
Strand 2	A	1258	1264	anti-parallel
Strand 3	A	1246	1255	anti-parallel
Strand 4	A	1235	1240	anti-parallel
Strand 5	A	1220	1225	anti-parallel
Strand 6	A	1179	1186	anti-parallel
Strand 7	A	1189	1194	anti-parallel
Strand 8	A	1207	1209	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1204	1205	first strand
Strand 2	A	1258	1264	anti-parallel
Strand 3	A	1246	1255	anti-parallel
Strand 4	A	1235	1240	anti-parallel
Strand 5	A	1282	1285	anti-parallel
Strand 6	A	1111	1115	anti-parallel
Strand 7	A	1159	1164	anti-parallel
Strand 8	A	1179	1186	anti-parallel
Strand 9	A	1189	1194	anti-parallel
Strand 10	A	1207	1209	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1122	1125	first strand
Strand 2	A	1134	1137	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1149	1152	first strand
Strand 2	A	1142	1145	anti-parallel
Strand 3	C	560	563	anti-parallel
Strand 4	C	541	543	parallel
Strand 5	C	521	523	parallel
Strand 6	C	496	503	parallel
Strand 7	C	477	483	parallel
Strand 8	C	472	474	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1149	1152	first strand
Strand 2	A	1142	1145	anti-parallel
Strand 3	C	560	563	anti-parallel
Strand 4	C	541	543	parallel
Strand 5	C	521	523	parallel
Strand 6	C	496	503	parallel
Strand 7	C	516	518	parallel
Strand 8	C	536	538	parallel
Strand 9	C	556	558	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	887	890	first strand
Strand 2	B	879	884	anti-parallel
Strand 3	B	1066	1075	anti-parallel
Strand 4	B	914	917	anti-parallel
Strand 5	B	904	906	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	887	890	first strand
Strand 2	B	879	884	anti-parallel
Strand 3	B	1066	1075	anti-parallel
Strand 4	B	941	948	anti-parallel
Strand 5	B	1015	1021	anti-parallel
Strand 6	B	1026	1031	anti-parallel
Strand 7	B	1034	1040	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	897	900	first strand
Strand 2	B	924	927	anti-parallel
Strand 3	B	1052	1058	anti-parallel
Strand 4	B	962	969	anti-parallel
Strand 5	B	972	979	anti-parallel
Strand 6	B	982	988	anti-parallel
Strand 7	B	994	1000	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	935	936	first strand
Strand 2	B	1047	1048	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1112	1115	first strand
Strand 2	B	1282	1285	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1122	1125	first strand
Strand 2	B	1134	1137	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1149	1152	first strand
Strand 2	B	1142	1145	anti-parallel
Strand 3	D	560	563	anti-parallel
Strand 4	D	541	545	parallel
Strand 5	D	521	528	parallel
Strand 6	D	496	503	parallel
Strand 7	D	516	518	parallel
Strand 8	D	536	538	parallel
Strand 9	D	556	558	parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	487	493	first strand
Strand 2	D	506	513	parallel
Strand 3	D	521	528	parallel
Strand 4	D	541	545	parallel
Strand 5	D	560	563	parallel
Strand 6	B	1142	1145	anti-parallel
Strand 7	B	1149	1152	anti-parallel

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There are 8 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	552	553	first strand
Strand 2	D	531	533	parallel
Strand 3	D	506	513	parallel
Strand 4	D	521	528	parallel
Strand 5	D	496	503	parallel
Strand 6	D	516	518	parallel
Strand 7	D	536	538	parallel
Strand 8	D	556	558	parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1149	1152	first strand
Strand 2	B	1142	1145	anti-parallel
Strand 3	D	560	563	anti-parallel
Strand 4	D	541	545	parallel
Strand 5	D	521	528	parallel
Strand 6	D	496	503	parallel
Strand 7	D	477	483	parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1159	1164	first strand
Strand 2	B	1179	1186	anti-parallel
Strand 3	B	1220	1225	anti-parallel
Strand 4	B	1235	1240	anti-parallel
Strand 5	B	1246	1255	anti-parallel
Strand 6	B	1258	1264	anti-parallel
Strand 7	B	1204	1205	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1159	1164	first strand
Strand 2	B	1179	1186	anti-parallel
Strand 3	B	1189	1194	anti-parallel
Strand 4	B	1207	1209	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	487	493	first strand
Strand 2	C	506	513	parallel
Strand 3	C	526	528	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	487	493	first strand
Strand 2	C	506	513	parallel
Strand 3	C	531	533	parallel
Strand 4	C	552	553	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JLV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JLV