Analysis of interatomic Contacts of Structural Units in PDB entry:
5JLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JLY entry

There are 3 chains in PDB entry 5JLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 167
B
 MET 1GLU 167
C
 MET 1GLY 166
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5JLY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 31Right-handed 310
Helix 2
AA2
A
49 58Right-handed alpha
Helix 3
AA3
A
58 65Right-handed alpha
Helix 4
AA4
A
76 86Right-handed alpha
Helix 5
AA5
A
87 91Right-handed 310
Helix 6
AA6
A
106 112Right-handed alpha
Helix 7
AA7
A
148 165Right-handed alpha
Helix 8
AA8
B
28 31Right-handed 310
Helix 9
AA9
B
49 58Right-handed alpha
Helix 10
AB1
B
58 65Right-handed alpha
Helix 11
AB2
B
76 86Right-handed alpha
Helix 12
AB3
B
87 91Right-handed 310
Helix 13
AB4
B
106 112Right-handed alpha
Helix 14
AB5
B
148 165Right-handed alpha
Helix 15
AB6
C
28 31Right-handed 310
Helix 16
AB7
C
49 58Right-handed alpha
Helix 17
AB8
C
58 65Right-handed alpha
Helix 18
AB9
C
76 86Right-handed alpha
Helix 19
AC1
C
87 91Right-handed 310
Helix 20
AC2
C
106 112Right-handed alpha
Helix 21
AC3
C
148 165Right-handed alpha
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There are 5 sheets in PDB entry 5JLY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 26first strand
Strand 2
A
13 18anti-parallel
Strand 3
A
100 102anti-parallel
Strand 4
A
67 73parallel
Strand 5
A
34 39parallel
Strand 6
A
124 129anti-parallel
Strand 7
A
135 141anti-parallel
Strand 8
B
135 141anti-parallel
Strand 9
B
124 129anti-parallel
Strand 10
B
34 39anti-parallel
Strand 11
B
67 73parallel
Strand 12
B
100 102parallel
Strand 13
B
13 17anti-parallel
Strand 14
B
22 26anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 116first strand
Strand 2
A
121 122anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 116first strand
Strand 2
B
121 122anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 8first strand
Strand 2
C
134 141anti-parallel
Strand 3
C
124 129anti-parallel
Strand 4
C
34 39anti-parallel
Strand 5
C
67 73parallel
Strand 6
C
100 102parallel
Strand 7
C
13 17anti-parallel
Strand 8
C
22 26anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
115 116first strand
Strand 2
C
121 122anti-parallel
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