Analysis of interatomic Contacts of Structural Units in PDB entry:
5JM0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JM0 entry

There is 1 chain in PDB entry 5JM0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	UNK -12	PHE 1083

There are 26 helices in PDB entry 5JM0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	-11	-5	Right-handed alpha
Helix 2	AA2	A	78	82	Right-handed alpha
Helix 3	AA3	A	120	125	Right-handed alpha
Helix 4	AA4	A	210	229	Right-handed alpha
Helix 5	AA5	A	233	251	Right-handed alpha
Helix 6	AA6	A	254	270	Right-handed alpha
Helix 7	AA7	A	306	311	Right-handed alpha
Helix 8	AA8	A	314	328	Right-handed alpha
Helix 9	AA9	A	338	348	Right-handed alpha
Helix 10	AB1	A	352	363	Right-handed alpha
Helix 11	AB2	A	381	391	Right-handed alpha
Helix 12	AB3	A	393	398	Right-handed 310
Helix 13	AB4	A	418	426	Right-handed alpha
Helix 14	AB5	A	477	480	Right-handed 310
Helix 15	AB6	A	481	487	Right-handed alpha
Helix 16	AB7	A	511	523	Right-handed alpha
Helix 17	AB8	A	537	549	Right-handed alpha
Helix 18	AB9	A	568	572	Right-handed 310
Helix 19	AC1	A	575	595	Right-handed alpha
Helix 20	AC2	A	609	621	Right-handed alpha
Helix 21	AC3	A	622	624	Right-handed 310
Helix 22	AC4	A	634	642	Right-handed alpha
Helix 23	AC5	A	643	657	Right-handed alpha
Helix 24	AC6	A	664	668	Right-handed 310
Helix 25	AC7	A	949	954	Right-handed alpha
Helix 26	AC8	A	955	960	Right-handed 310

There are 12 sheets in PDB entry 5JM0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	49	first strand
Strand 2	A	199	202	anti-parallel
Strand 3	A	128	130	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	56	61	anti-parallel
Strand 3	A	107	112	anti-parallel
Strand 4	A	172	176	anti-parallel
Strand 5	A	139	140	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	291	first strand
Strand 2	A	531	532	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	365	368	parallel
Strand 3	A	333	335	parallel
Strand 4	A	294	296	parallel
Strand 5	A	497	498	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	432	first strand
Strand 2	A	458	462	parallel
Strand 3	A	449	452	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	715	718	first strand
Strand 2	A	725	729	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	777	first strand
Strand 2	A	754	759	anti-parallel
Strand 3	A	841	848	anti-parallel
Strand 4	A	913	920	anti-parallel
Strand 5	A	906	909	anti-parallel
Strand 6	A	882	883	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	784	786	first strand
Strand 2	A	796	798	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	808	810	first strand
Strand 2	A	823	835	anti-parallel
Strand 3	A	932	938	anti-parallel
Strand 4	A	895	902	anti-parallel
Strand 5	A	887	891	anti-parallel
Strand 6	A	855	858	anti-parallel
Strand 7	A	865	868	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	813	816	first strand
Strand 2	A	823	835	anti-parallel
Strand 3	A	932	938	anti-parallel
Strand 4	A	895	902	anti-parallel
Strand 5	A	941	944	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	986	993	first strand
Strand 2	A	1014	1020	anti-parallel
Strand 3	A	1076	1082	anti-parallel
Strand 4	A	1038	1041	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1028	1029	first strand
Strand 2	A	1070	1071	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JM0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JM0