Analysis of interatomic Contacts of Structural Units in PDB entry:
5JM4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JM4 entry

There are 8 chains in PDB entry 5JM4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2SER 230
B
 MET 1SER 230
D
 GLN 420GLY 421
D
 ASP 424ASP 424
D
 LEU 426ALA 429
E
 GLN 420GLY 421
E
 ASP 424ASP 424
E
 LEU 426ALA 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5JM4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 17Right-handed alpha
Helix 2
AA2
A
18 32Right-handed alpha
Helix 3
AA3
A
37 67Right-handed alpha
Helix 4
AA4
A
73 104Right-handed alpha
Helix 5
AA5
A
104 109Right-handed alpha
Helix 6
AA6
A
111 131Right-handed alpha
Helix 7
AA7
A
134 160Right-handed alpha
Helix 8
AA8
A
164 181Right-handed alpha
Helix 9
AA9
A
184 201Right-handed alpha
Helix 10
AB1
A
202 206Right-handed 310
Helix 11
AB2
A
210 230Right-handed alpha
Helix 12
AB3
B
2 16Right-handed alpha
Helix 13
AB4
B
18 32Right-handed alpha
Helix 14
AB5
B
37 69Right-handed alpha
Helix 15
AB6
B
72 104Right-handed alpha
Helix 16
AB7
B
104 109Right-handed alpha
Helix 17
AB8
B
111 131Right-handed alpha
Helix 18
AB9
B
134 160Right-handed alpha
Helix 19
AC1
B
164 181Right-handed alpha
Helix 20
AC2
B
184 202Right-handed alpha
Helix 21
AC3
B
203 206Right-handed 310
Helix 22
AC4
B
211 230Right-handed alpha
Helix 23
AC5
D
421 426Right-handed alpha
Helix 24
AC6
E
421 426Right-handed alpha
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There are no sheets in PDB entry 5JM4
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il