Analysis of interatomic Contacts of Structural Units in PDB entry:
5JM6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JM6 entry

There are 6 chains in PDB entry 5JM6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 50	SER 518
E	ARG 50	SER 518
F	ARG 50	SER 518
B	ARG 50	SER 518
C	ARG 50	SER 518
D	ARG 50	SER 518

There are 91 helices in PDB entry 5JM6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	53	Right-handed 310
Helix 2	AA2	A	54	65	Right-handed alpha
Helix 3	AA3	A	67	82	Right-handed alpha
Helix 4	AA4	A	166	170	Right-handed 310
Helix 5	AA5	A	208	212	Right-handed 310
Helix 6	AA6	A	253	257	Right-handed 310
Helix 7	AA7	A	258	269	Right-handed alpha
Helix 8	AA8	A	273	275	Right-handed 310
Helix 9	AA9	A	304	321	Right-handed alpha
Helix 10	AB1	A	352	369	Right-handed alpha
Helix 11	AB2	A	379	384	Right-handed alpha
Helix 12	AB3	A	400	404	Right-handed 310
Helix 13	AB4	A	429	444	Right-handed alpha
Helix 14	AB5	A	465	471	Right-handed alpha
Helix 15	AB6	A	494	515	Right-handed alpha
Helix 16	AB7	E	50	53	Right-handed 310
Helix 17	AB8	E	54	65	Right-handed alpha
Helix 18	AB9	E	67	82	Right-handed alpha
Helix 19	AC1	E	166	170	Right-handed 310
Helix 20	AC2	E	208	212	Right-handed 310
Helix 21	AC3	E	253	257	Right-handed 310
Helix 22	AC4	E	258	270	Right-handed alpha
Helix 23	AC5	E	273	275	Right-handed 310
Helix 24	AC6	E	304	320	Right-handed alpha
Helix 25	AC7	E	352	369	Right-handed alpha
Helix 26	AC8	E	379	384	Right-handed alpha
Helix 27	AC9	E	400	404	Right-handed 310
Helix 28	AD1	E	429	444	Right-handed alpha
Helix 29	AD2	E	465	471	Right-handed alpha
Helix 30	AD3	E	494	515	Right-handed alpha
Helix 31	AD4	F	50	53	Right-handed 310
Helix 32	AD5	F	54	65	Right-handed alpha
Helix 33	AD6	F	67	82	Right-handed alpha
Helix 34	AD7	F	166	170	Right-handed 310
Helix 35	AD8	F	208	212	Right-handed 310
Helix 36	AD9	F	253	257	Right-handed 310
Helix 37	AE1	F	258	269	Right-handed alpha
Helix 38	AE2	F	273	275	Right-handed 310
Helix 39	AE3	F	304	320	Right-handed alpha
Helix 40	AE4	F	352	369	Right-handed alpha
Helix 41	AE5	F	379	384	Right-handed alpha
Helix 42	AE6	F	400	404	Right-handed 310
Helix 43	AE7	F	429	444	Right-handed alpha
Helix 44	AE8	F	465	471	Right-handed alpha
Helix 45	AE9	F	494	515	Right-handed alpha
Helix 46	AF1	B	50	53	Right-handed 310
Helix 47	AF2	B	54	65	Right-handed alpha
Helix 48	AF3	B	67	82	Right-handed alpha
Helix 49	AF4	B	166	170	Right-handed 310
Helix 50	AF5	B	208	212	Right-handed 310
Helix 51	AF6	B	253	257	Right-handed 310
Helix 52	AF7	B	258	269	Right-handed alpha
Helix 53	AF8	B	273	275	Right-handed 310
Helix 54	AF9	B	304	320	Right-handed alpha
Helix 55	AG1	B	338	342	Right-handed 310
Helix 56	AG2	B	352	369	Right-handed alpha
Helix 57	AG3	B	379	384	Right-handed alpha
Helix 58	AG4	B	400	404	Right-handed 310
Helix 59	AG5	B	429	444	Right-handed alpha
Helix 60	AG6	B	465	471	Right-handed alpha
Helix 61	AG7	B	494	515	Right-handed alpha
Helix 62	AG8	C	50	53	Right-handed 310
Helix 63	AG9	C	54	65	Right-handed alpha
Helix 64	AH1	C	67	82	Right-handed alpha
Helix 65	AH2	C	166	170	Right-handed 310
Helix 66	AH3	C	208	212	Right-handed 310
Helix 67	AH4	C	253	257	Right-handed 310
Helix 68	AH5	C	258	269	Right-handed alpha
Helix 69	AH6	C	273	275	Right-handed 310
Helix 70	AH7	C	304	320	Right-handed alpha
Helix 71	AH8	C	352	369	Right-handed alpha
Helix 72	AH9	C	379	384	Right-handed alpha
Helix 73	AI1	C	400	404	Right-handed 310
Helix 74	AI2	C	429	444	Right-handed alpha
Helix 75	AI3	C	465	471	Right-handed alpha
Helix 76	AI4	C	494	515	Right-handed alpha
Helix 77	AI5	D	50	53	Right-handed 310
Helix 78	AI6	D	54	65	Right-handed alpha
Helix 79	AI7	D	67	82	Right-handed alpha
Helix 80	AI8	D	166	170	Right-handed 310
Helix 81	AI9	D	208	212	Right-handed 310
Helix 82	AJ1	D	253	257	Right-handed 310
Helix 83	AJ2	D	258	269	Right-handed alpha
Helix 84	AJ3	D	273	275	Right-handed 310
Helix 85	AJ4	D	304	321	Right-handed alpha
Helix 86	AJ5	D	352	369	Right-handed alpha
Helix 87	AJ6	D	379	384	Right-handed alpha
Helix 88	AJ7	D	400	404	Right-handed 310
Helix 89	AJ8	D	429	444	Right-handed alpha
Helix 90	AJ9	D	465	471	Right-handed alpha
Helix 91	AK1	D	494	515	Right-handed alpha

There are 28 sheets in PDB entry 5JM6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	86	first strand
Strand 2	A	102	107	parallel
Strand 3	A	111	117	anti-parallel
Strand 4	A	330	336	anti-parallel
Strand 5	A	127	133	parallel
Strand 6	A	386	390	parallel
Strand 7	A	473	478	parallel
Strand 8	A	417	419	anti-parallel
Strand 9	A	448	450	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	160	first strand
Strand 2	A	139	141	anti-parallel
Strand 3	A	277	286	anti-parallel
Strand 4	A	174	183	anti-parallel
Strand 5	A	190	196	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	155	first strand
Strand 2	A	228	231	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	291	293	first strand
Strand 2	A	299	302	anti-parallel
Strand 3	A	489	492	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	394	first strand
Strand 2	A	480	481	parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	85	86	first strand
Strand 2	E	102	107	parallel
Strand 3	E	111	117	anti-parallel
Strand 4	E	330	336	anti-parallel
Strand 5	E	127	133	parallel
Strand 6	E	386	390	parallel
Strand 7	E	473	478	parallel
Strand 8	E	417	419	anti-parallel
Strand 9	E	448	450	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	190	196	first strand
Strand 2	E	174	183	anti-parallel
Strand 3	E	277	286	anti-parallel
Strand 4	E	139	146	anti-parallel
Strand 5	E	153	160	anti-parallel
Strand 6	E	228	231	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	291	293	first strand
Strand 2	E	299	302	anti-parallel
Strand 3	E	489	492	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	393	394	first strand
Strand 2	E	480	481	parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	85	86	first strand
Strand 2	F	102	107	parallel
Strand 3	F	111	117	anti-parallel
Strand 4	F	330	336	anti-parallel
Strand 5	F	127	133	parallel
Strand 6	F	386	390	parallel
Strand 7	F	473	478	parallel
Strand 8	F	417	419	anti-parallel
Strand 9	F	448	450	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	160	first strand
Strand 2	F	139	141	anti-parallel
Strand 3	F	277	286	anti-parallel
Strand 4	F	174	183	anti-parallel
Strand 5	F	190	196	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	153	155	first strand
Strand 2	F	228	231	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	291	293	first strand
Strand 2	F	299	302	anti-parallel
Strand 3	F	489	492	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	393	394	first strand
Strand 2	F	480	481	parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	86	first strand
Strand 2	B	102	107	parallel
Strand 3	B	111	117	anti-parallel
Strand 4	B	330	336	anti-parallel
Strand 5	B	127	133	parallel
Strand 6	B	386	390	parallel
Strand 7	B	473	478	parallel
Strand 8	B	417	419	anti-parallel
Strand 9	B	448	450	parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	160	first strand
Strand 2	B	139	141	anti-parallel
Strand 3	B	277	286	anti-parallel
Strand 4	B	174	183	anti-parallel
Strand 5	B	190	196	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	155	first strand
Strand 2	B	228	231	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	291	293	first strand
Strand 2	B	299	302	anti-parallel
Strand 3	B	489	492	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	393	394	first strand
Strand 2	B	480	481	parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	86	first strand
Strand 2	C	102	107	parallel
Strand 3	C	111	117	anti-parallel
Strand 4	C	330	336	anti-parallel
Strand 5	C	127	133	parallel
Strand 6	C	386	390	parallel
Strand 7	C	473	478	parallel
Strand 8	C	417	419	anti-parallel
Strand 9	C	448	450	parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	196	first strand
Strand 2	C	174	183	anti-parallel
Strand 3	C	277	286	anti-parallel
Strand 4	C	139	146	anti-parallel
Strand 5	C	153	160	anti-parallel
Strand 6	C	228	231	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	291	293	first strand
Strand 2	C	299	302	anti-parallel
Strand 3	C	489	492	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	394	first strand
Strand 2	C	480	481	parallel

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There are 9 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	86	first strand
Strand 2	D	102	107	parallel
Strand 3	D	111	117	anti-parallel
Strand 4	D	330	336	anti-parallel
Strand 5	D	127	133	parallel
Strand 6	D	386	390	parallel
Strand 7	D	473	478	parallel
Strand 8	D	417	419	anti-parallel
Strand 9	D	448	450	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	160	first strand
Strand 2	D	139	141	anti-parallel
Strand 3	D	277	286	anti-parallel
Strand 4	D	174	183	anti-parallel
Strand 5	D	190	196	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	155	first strand
Strand 2	D	228	231	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	291	293	first strand
Strand 2	D	299	302	anti-parallel
Strand 3	D	489	492	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	393	394	first strand
Strand 2	D	480	481	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JM6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JM6