Analysis of interatomic Contacts of Structural Units in PDB entry:
5JM7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JM7 entry

There is 1 chain in PDB entry 5JM7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 9ALA 571
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5JM7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 24Right-handed alpha
Helix 2
AA2
A
79 95Right-handed alpha
Helix 3
AA3
A
98 123Right-handed alpha
Helix 4
AA4
A
125 132Right-handed 310
Helix 5
AA5
A
135 141Right-handed alpha
Helix 6
AA6
A
161 168Right-handed alpha
Helix 7
AA7
A
169 172Right-handed 310
Helix 8
AA8
A
195 208Right-handed alpha
Helix 9
AA9
A
209 215Right-handed 310
Helix 10
AB1
A
225 235Right-handed alpha
Helix 11
AB2
A
235 244Right-handed alpha
Helix 12
AB3
A
291 305Right-handed alpha
Helix 13
AB4
A
307 317Right-handed alpha
Helix 14
AB5
A
362 367Right-handed alpha
Helix 15
AB6
A
375 389Right-handed alpha
Helix 16
AB7
A
391 407Right-handed alpha
Helix 17
AB8
A
407 419Right-handed alpha
Helix 18
AB9
A
425 427Right-handed 310
Helix 19
AC1
A
445 447Right-handed 310
Helix 20
AC2
A
455 462Right-handed alpha
Helix 21
AC3
A
472 485Right-handed alpha
Helix 22
AC4
A
488 499Right-handed alpha
Helix 23
AC5
A
503 520Right-handed alpha
Helix 24
AC6
A
525 534Right-handed alpha
Helix 25
AC7
A
542 548Right-handed alpha
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There are 5 sheets in PDB entry 5JM7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 30first strand
Strand 2
A
37 41anti-parallel
Strand 3
A
47 54anti-parallel
Strand 4
A
62 70anti-parallel
Strand 5
A
75 78anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 191first strand
Strand 2
A
327 332anti-parallel
Strand 3
A
338 348anti-parallel
Strand 4
A
273 277anti-parallel
Strand 5
A
265 267anti-parallel
Strand 6
A
247 259anti-parallel
Strand 7
A
175 183anti-parallel
Strand 8
A
219 224anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 322first strand
Strand 2
A
437 443parallel
Strand 3
A
429 434anti-parallel
Strand 4
A
358 361anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 422first strand
Strand 2
A
449 451anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 540first strand
Strand 2
A
562 566anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il