Analysis of interatomic Contacts of Structural Units in PDB entry:
5JM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JM9 entry

There is 1 chain in PDB entry 5JM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 3LEU 470
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5JM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 19Right-handed alpha
Helix 2
AA2
A
21 35Right-handed alpha
Helix 3
AA3
A
77 81Right-handed 310
Helix 4
AA4
A
121 125Right-handed 310
Helix 5
AA5
A
199 204Right-handed alpha
Helix 6
AA6
A
212 224Right-handed alpha
Helix 7
AA7
A
226 228Right-handed 310
Helix 8
AA8
A
257 277Right-handed alpha
Helix 9
AA9
A
278 283Right-handed 310
Helix 10
AB1
A
304 307Right-handed 310
Helix 11
AB2
A
308 322Right-handed alpha
Helix 12
AB3
A
327 334Right-handed alpha
Helix 13
AB4
A
350 354Right-handed 310
Helix 14
AB5
A
379 394Right-handed alpha
Helix 15
AB6
A
411 421Right-handed alpha
Helix 16
AB7
A
444 466Right-handed alpha
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There are 3 sheets in PDB entry 5JM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
56 62parallel
Strand 3
A
66 72anti-parallel
Strand 4
A
286 292anti-parallel
Strand 5
A
83 88parallel
Strand 6
A
336 340parallel
Strand 7
A
423 428parallel
Strand 8
A
366 370anti-parallel
Strand 9
A
397 401parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 151first strand
Strand 2
A
129 137anti-parallel
Strand 3
A
230 239anti-parallel
Strand 4
A
93 105anti-parallel
Strand 5
A
108 116anti-parallel
Strand 6
A
182 183anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 246first strand
Strand 2
A
252 255anti-parallel
Strand 3
A
439 442anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il