Analysis of interatomic Contacts of Structural Units in PDB entry:
5JMC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JMC entry

There are 5 chains in PDB entry 5JMC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 868	VAL 1298
B	ASP 476	LYS 566
C	GLY 868	LEU 1297
D	ASP 476	THR 567
E	GLY 868	LEU 1057

There are 28 helices in PDB entry 5JMC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	872	877	Right-handed alpha
Helix 2	AA2	A	954	958	Right-handed 310
Helix 3	AA3	A	1080	1092	Right-handed alpha
Helix 4	AA4	A	1210	1214	Right-handed 310
Helix 5	AA5	A	1265	1269	Right-handed alpha
Helix 6	AA6	B	548	550	Right-handed 310
Helix 7	AA7	C	873	877	Right-handed 310
Helix 8	AA8	C	929	933	Right-handed 310
Helix 9	AA9	C	954	958	Right-handed 310
Helix 10	AB1	C	1080	1092	Right-handed alpha
Helix 11	AB2	C	1210	1215	Right-handed 310
Helix 12	AB3	C	1265	1270	Right-handed alpha
Helix 13	AB4	D	548	550	Right-handed 310
Helix 14	AB5	E	872	877	Right-handed alpha
Helix 15	AB6	E	929	933	Right-handed 310
Helix 16	AB7	E	954	958	Right-handed 310
Helix 17	AB8	E	1080	1092	Right-handed alpha
Helix 18	AB9	E	1210	1214	Right-handed 310
Helix 19	AC1	E	1277	1280	Right-handed 310
Helix 20	AC2	F	548	550	Right-handed 310
Helix 21	AC3	G	873	877	Right-handed 310
Helix 22	AC4	G	929	933	Right-handed 310
Helix 23	AC5	G	954	958	Right-handed 310
Helix 24	AC6	G	1080	1092	Right-handed alpha
Helix 25	AC7	G	1210	1214	Right-handed 310
Helix 26	AC8	G	1265	1270	Right-handed alpha
Helix 27	AC9	G	1277	1280	Right-handed 310
Helix 28	AD1	H	548	550	Right-handed 310

There are 45 sheets in PDB entry 5JMC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	887	890	first strand
Strand 2	A	879	884	anti-parallel
Strand 3	A	1066	1075	anti-parallel
Strand 4	A	914	917	anti-parallel
Strand 5	A	904	906	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	887	890	first strand
Strand 2	A	879	884	anti-parallel
Strand 3	A	1066	1075	anti-parallel
Strand 4	A	941	948	anti-parallel
Strand 5	A	1015	1021	anti-parallel
Strand 6	A	1026	1031	anti-parallel
Strand 7	A	1034	1040	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	897	900	first strand
Strand 2	A	924	927	anti-parallel
Strand 3	A	1052	1058	anti-parallel
Strand 4	A	962	969	anti-parallel
Strand 5	A	972	979	anti-parallel
Strand 6	A	982	988	anti-parallel
Strand 7	A	994	1000	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	935	936	first strand
Strand 2	A	1047	1048	anti-parallel

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There are 9 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1122	1125	first strand
Strand 2	A	1134	1137	anti-parallel
Strand 3	A	1259	1264	anti-parallel
Strand 4	A	1246	1254	anti-parallel
Strand 5	A	1236	1240	anti-parallel
Strand 6	A	1220	1224	anti-parallel
Strand 7	A	1179	1186	anti-parallel
Strand 8	A	1189	1194	anti-parallel
Strand 9	A	1207	1209	anti-parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1122	1125	first strand
Strand 2	A	1134	1137	anti-parallel
Strand 3	A	1259	1264	anti-parallel
Strand 4	A	1246	1254	anti-parallel
Strand 5	A	1236	1240	anti-parallel
Strand 6	A	1220	1224	anti-parallel
Strand 7	A	1179	1186	anti-parallel
Strand 8	A	1159	1164	anti-parallel
Strand 9	A	1110	1115	anti-parallel
Strand 10	A	1282	1285	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1149	1152	first strand
Strand 2	A	1142	1145	anti-parallel
Strand 3	B	560	562	anti-parallel
Strand 4	B	541	543	parallel
Strand 5	B	521	523	parallel
Strand 6	B	501	503	parallel
Strand 7	B	482	483	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	478	479	first strand
Strand 2	B	496	498	parallel
Strand 3	B	516	518	parallel
Strand 4	B	536	538	parallel
Strand 5	B	556	558	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	552	553	first strand
Strand 2	B	531	533	parallel
Strand 3	B	511	513	parallel
Strand 4	B	490	493	parallel
Strand 5	G	869	871	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	506	508	first strand
Strand 2	B	526	528	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	887	890	first strand
Strand 2	C	879	884	anti-parallel
Strand 3	C	1066	1075	anti-parallel
Strand 4	C	914	917	anti-parallel
Strand 5	C	904	906	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	887	890	first strand
Strand 2	C	879	884	anti-parallel
Strand 3	C	1066	1075	anti-parallel
Strand 4	C	941	948	anti-parallel
Strand 5	C	1015	1021	anti-parallel
Strand 6	C	1026	1031	anti-parallel
Strand 7	C	1034	1040	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	897	900	first strand
Strand 2	C	923	927	anti-parallel
Strand 3	C	1052	1058	anti-parallel
Strand 4	C	962	969	anti-parallel
Strand 5	C	972	979	anti-parallel
Strand 6	C	982	988	anti-parallel
Strand 7	C	994	1000	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	935	936	first strand
Strand 2	C	1047	1048	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1204	1205	first strand
Strand 2	C	1258	1264	anti-parallel
Strand 3	C	1246	1255	anti-parallel
Strand 4	C	1235	1240	anti-parallel
Strand 5	C	1220	1224	anti-parallel
Strand 6	C	1179	1185	anti-parallel
Strand 7	C	1190	1194	anti-parallel
Strand 8	C	1207	1209	anti-parallel

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There are 10 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1204	1205	first strand
Strand 2	C	1258	1264	anti-parallel
Strand 3	C	1246	1255	anti-parallel
Strand 4	C	1235	1240	anti-parallel
Strand 5	C	1281	1285	anti-parallel
Strand 6	C	1110	1115	anti-parallel
Strand 7	C	1159	1164	anti-parallel
Strand 8	C	1179	1185	anti-parallel
Strand 9	C	1190	1194	anti-parallel
Strand 10	C	1207	1209	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1122	1125	first strand
Strand 2	C	1134	1137	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1149	1152	first strand
Strand 2	C	1142	1145	anti-parallel
Strand 3	D	560	563	anti-parallel
Strand 4	D	541	543	parallel
Strand 5	D	521	523	parallel
Strand 6	D	496	503	parallel
Strand 7	D	477	483	parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1149	1152	first strand
Strand 2	C	1142	1145	anti-parallel
Strand 3	D	560	563	anti-parallel
Strand 4	D	541	543	parallel
Strand 5	D	521	523	parallel
Strand 6	D	496	503	parallel
Strand 7	D	516	518	parallel
Strand 8	D	536	538	parallel
Strand 9	D	556	558	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	528	first strand
Strand 2	D	506	513	parallel
Strand 3	D	531	533	parallel
Strand 4	D	552	553	parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	528	first strand
Strand 2	D	506	513	parallel
Strand 3	D	488	493	parallel
Strand 4	E	869	871	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	887	890	first strand
Strand 2	E	879	884	anti-parallel
Strand 3	E	1066	1075	anti-parallel
Strand 4	E	910	917	anti-parallel
Strand 5	E	904	907	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	887	890	first strand
Strand 2	E	879	884	anti-parallel
Strand 3	E	1066	1075	anti-parallel
Strand 4	E	941	948	anti-parallel
Strand 5	E	1014	1021	anti-parallel
Strand 6	E	1026	1031	anti-parallel
Strand 7	E	1034	1040	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	897	900	first strand
Strand 2	E	923	927	anti-parallel
Strand 3	E	1052	1058	anti-parallel
Strand 4	E	962	969	anti-parallel
Strand 5	E	972	979	anti-parallel
Strand 6	E	982	988	anti-parallel
Strand 7	E	994	1000	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	935	936	first strand
Strand 2	E	1047	1048	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1112	1115	first strand
Strand 2	E	1282	1285	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1122	1125	first strand
Strand 2	E	1134	1137	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1149	1152	first strand
Strand 2	E	1142	1145	anti-parallel
Strand 3	F	560	563	anti-parallel
Strand 4	F	541	543	parallel
Strand 5	F	521	523	parallel
Strand 6	F	496	503	parallel
Strand 7	F	477	483	parallel

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There are 9 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1149	1152	first strand
Strand 2	E	1142	1145	anti-parallel
Strand 3	F	560	563	anti-parallel
Strand 4	F	541	543	parallel
Strand 5	F	521	523	parallel
Strand 6	F	496	503	parallel
Strand 7	F	516	518	parallel
Strand 8	F	536	538	parallel
Strand 9	F	556	558	parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1160	1164	first strand
Strand 2	E	1178	1186	anti-parallel
Strand 3	E	1220	1224	anti-parallel
Strand 4	E	1236	1240	anti-parallel
Strand 5	E	1246	1254	anti-parallel
Strand 6	E	1259	1264	anti-parallel
Strand 7	E	1204	1205	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1160	1164	first strand
Strand 2	E	1178	1186	anti-parallel
Strand 3	E	1189	1194	anti-parallel
Strand 4	E	1207	1209	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	491	493	first strand
Strand 2	F	511	513	parallel
Strand 3	F	531	533	parallel
Strand 4	F	552	553	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	506	508	first strand
Strand 2	F	526	528	parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	887	890	first strand
Strand 2	G	879	884	anti-parallel
Strand 3	G	1066	1075	anti-parallel
Strand 4	G	913	917	anti-parallel
Strand 5	G	904	906	anti-parallel

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There are 7 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	887	890	first strand
Strand 2	G	879	884	anti-parallel
Strand 3	G	1066	1075	anti-parallel
Strand 4	G	941	948	anti-parallel
Strand 5	G	1014	1021	anti-parallel
Strand 6	G	1027	1031	anti-parallel
Strand 7	G	1034	1039	anti-parallel

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There are 7 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	897	900	first strand
Strand 2	G	924	927	anti-parallel
Strand 3	G	1052	1058	anti-parallel
Strand 4	G	962	969	anti-parallel
Strand 5	G	972	979	anti-parallel
Strand 6	G	982	988	anti-parallel
Strand 7	G	994	1000	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	935	936	first strand
Strand 2	G	1047	1048	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1112	1115	first strand
Strand 2	G	1282	1285	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1122	1125	first strand
Strand 2	G	1134	1137	anti-parallel

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There are 7 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1149	1152	first strand
Strand 2	G	1142	1145	anti-parallel
Strand 3	H	560	563	anti-parallel
Strand 4	H	541	545	parallel
Strand 5	H	521	528	parallel
Strand 6	H	501	503	parallel
Strand 7	H	482	483	parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1149	1152	first strand
Strand 2	G	1142	1145	anti-parallel
Strand 3	H	560	563	anti-parallel
Strand 4	H	541	545	parallel
Strand 5	H	521	528	parallel
Strand 6	H	506	508	parallel

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There are 7 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1160	1164	first strand
Strand 2	G	1179	1186	anti-parallel
Strand 3	G	1220	1224	anti-parallel
Strand 4	G	1236	1240	anti-parallel
Strand 5	G	1246	1254	anti-parallel
Strand 6	G	1259	1264	anti-parallel
Strand 7	G	1204	1205	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	1160	1164	first strand
Strand 2	G	1179	1186	anti-parallel
Strand 3	G	1189	1194	anti-parallel
Strand 4	G	1207	1209	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	477	479	first strand
Strand 2	H	496	498	parallel
Strand 3	H	516	518	parallel
Strand 4	H	536	538	parallel
Strand 5	H	556	558	parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	490	493	first strand
Strand 2	H	510	513	parallel
Strand 3	H	531	533	parallel
Strand 4	H	552	553	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JMC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JMC