Analysis of interatomic Contacts of Structural Units in PDB entry:
5JME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JME entry

There are 9 chains in PDB entry 5JME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -2GLU 206
B
 LYS -1ARG 207
C
 LYS -1ARG 207
D
 LYS -1ARG 207
E
 ASP -4ARG 207
F
 GLY 1CYS 16
G
 GLY 1CYS 16
H
 GLY 1CYS 16
I
 GLY 1CYS 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5JME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-2 15Right-handed alpha
Helix 2
AA2
A
68 73Right-handed 310
Helix 3
AA3
A
83 85Right-handed 310
Helix 4
AA4
B
0 15Right-handed alpha
Helix 5
AA5
B
68 73Right-handed 310
Helix 6
AA6
B
83 85Right-handed 310
Helix 7
AA7
C
0 15Right-handed alpha
Helix 8
AA8
C
63 66Right-handed 310
Helix 9
AA9
C
68 73Right-handed 310
Helix 10
AB1
C
83 85Right-handed 310
Helix 11
AB2
D
0 15Right-handed alpha
Helix 12
AB3
D
63 66Right-handed 310
Helix 13
AB4
D
68 73Right-handed 310
Helix 14
AB5
D
83 85Right-handed 310
Helix 15
AB6
E
-3 15Right-handed alpha
Helix 16
AB7
E
63 66Right-handed 310
Helix 17
AB8
E
68 73Right-handed 310
Helix 18
AB9
E
83 85Right-handed 310
Helix 19
AC1
F
1 4Right-handed 310
Helix 20
AC2
F
5 10Right-handed alpha
Helix 21
AC3
G
1 4Right-handed 310
Helix 22
AC4
G
5 10Right-handed alpha
Helix 23
AC5
H
1 4Right-handed 310
Helix 24
AC6
H
5 10Right-handed alpha
Helix 25
AC7
I
1 4Right-handed 310
Helix 26
AC8
I
5 10Right-handed alpha
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There are 15 sheets in PDB entry 5JME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 81first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
112 117anti-parallel
Strand 4
A
49 66anti-parallel
Strand 5
A
120 126anti-parallel
Strand 6
A
100 101anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 81first strand
Strand 2
A
106 110anti-parallel
Strand 3
A
112 117anti-parallel
Strand 4
A
49 66anti-parallel
Strand 5
A
29 44anti-parallel
Strand 6
A
154 157parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 92first strand
Strand 2
A
138 146anti-parallel
Strand 3
A
195 205anti-parallel
Strand 4
A
175 186anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 81first strand
Strand 2
B
106 110anti-parallel
Strand 3
B
112 117anti-parallel
Strand 4
B
49 66anti-parallel
Strand 5
B
120 126anti-parallel
Strand 6
B
100 101anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 81first strand
Strand 2
B
106 110anti-parallel
Strand 3
B
112 117anti-parallel
Strand 4
B
49 66anti-parallel
Strand 5
B
29 44anti-parallel
Strand 6
B
154 157parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 92first strand
Strand 2
B
138 146anti-parallel
Strand 3
B
191 206anti-parallel
Strand 4
B
174 188anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 81first strand
Strand 2
C
106 110anti-parallel
Strand 3
C
114 117anti-parallel
Strand 4
C
49 61anti-parallel
Strand 5
C
120 126anti-parallel
Strand 6
C
100 101anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 81first strand
Strand 2
C
106 110anti-parallel
Strand 3
C
114 117anti-parallel
Strand 4
C
49 61anti-parallel
Strand 5
C
29 44anti-parallel
Strand 6
C
154 157parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 92first strand
Strand 2
C
138 146anti-parallel
Strand 3
C
195 206anti-parallel
Strand 4
C
174 186anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
77 81first strand
Strand 2
D
106 110anti-parallel
Strand 3
D
114 117anti-parallel
Strand 4
D
49 61anti-parallel
Strand 5
D
120 126anti-parallel
Strand 6
D
100 101anti-parallel
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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
77 81first strand
Strand 2
D
106 110anti-parallel
Strand 3
D
114 117anti-parallel
Strand 4
D
49 61anti-parallel
Strand 5
D
29 44anti-parallel
Strand 6
D
154 158parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
90 92first strand
Strand 2
D
138 146anti-parallel
Strand 3
D
191 206anti-parallel
Strand 4
D
174 188anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
77 81first strand
Strand 2
E
106 110anti-parallel
Strand 3
E
114 117anti-parallel
Strand 4
E
49 61anti-parallel
Strand 5
E
120 126anti-parallel
Strand 6
E
100 101anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
77 81first strand
Strand 2
E
106 110anti-parallel
Strand 3
E
114 117anti-parallel
Strand 4
E
49 61anti-parallel
Strand 5
E
29 44anti-parallel
Strand 6
E
154 157parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
90 92first strand
Strand 2
E
138 146anti-parallel
Strand 3
E
195 206anti-parallel
Strand 4
E
174 186anti-parallel
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