Analysis of interatomic Contacts of Structural Units in PDB entry:
5JMQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JMQ entry

There is 1 chain in PDB entry 5JMQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 107TRP 445
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5JMQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
110 118Right-handed alpha
Helix 2
AA2
A
121 129Right-handed alpha
Helix 3
AA3
A
130 144Right-handed alpha
Helix 4
AA4
A
161 171Right-handed alpha
Helix 5
AA5
A
183 195Right-handed alpha
Helix 6
AA6
A
234 245Right-handed alpha
Helix 7
AA7
A
266 274Right-handed alpha
Helix 8
AA8
A
275 280Right-handed 310
Helix 9
AA9
A
285 287Right-handed 310
Helix 10
AB1
A
288 298Right-handed alpha
Helix 11
AB2
A
307 311Right-handed 310
Helix 12
AB3
A
327 331Right-handed 310
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There are 4 sheets in PDB entry 5JMQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 204first strand
Strand 2
A
175 179parallel
Strand 3
A
152 156parallel
Strand 4
A
217 222parallel
Strand 5
A
246 253parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 304first strand
Strand 2
A
384 395anti-parallel
Strand 3
A
346 359anti-parallel
Strand 4
A
256 264anti-parallel
Strand 5
A
316 322anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 304first strand
Strand 2
A
384 395anti-parallel
Strand 3
A
346 359anti-parallel
Strand 4
A
369 372anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 341first strand
Strand 2
A
400 409anti-parallel
Strand 3
A
417 426anti-parallel
Strand 4
A
434 443anti-parallel
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