Analysis of interatomic Contacts of Structural Units in PDB entry:
5JMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JMS entry

There is 1 chain in PDB entry 5JMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 44ASN 507
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5JMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
92 106Right-handed alpha
Helix 2
AA2
A
135 143Right-handed alpha
Helix 3
AA3
A
147 168Right-handed alpha
Helix 4
AA4
A
176 178Right-handed 310
Helix 5
AA5
A
207 212Right-handed alpha
Helix 6
AA6
A
219 225Right-handed alpha
Helix 7
AA7
A
230 246Right-handed alpha
Helix 8
AA8
A
254 265Right-handed alpha
Helix 9
AA9
A
271 277Right-handed 310
Helix 10
AB1
A
278 289Right-handed alpha
Helix 11
AB2
A
298 304Right-handed alpha
Helix 12
AB3
A
305 313Right-handed alpha
Helix 13
AB4
A
323 368Right-handed alpha
Helix 14
AB5
A
376 392Right-handed alpha
Helix 15
AB6
A
399 414Right-handed alpha
Helix 16
AB7
A
423 451Right-handed alpha
Helix 17
AB8
A
460 470Right-handed alpha
Helix 18
AB9
A
473 485Right-handed alpha
Helix 19
AC1
A
494 504Right-handed alpha
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There are 3 sheets in PDB entry 5JMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 59first strand
Strand 2
A
64 70anti-parallel
Strand 3
A
76 83anti-parallel
Strand 4
A
123 128anti-parallel
Strand 5
A
114 119anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
191 193anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
457 459first strand
Strand 2
A
491 493anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il