Analysis of interatomic Contacts of Structural Units in PDB entry:
5JMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JMY entry

There are 2 chains in PDB entry 5JMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 54TRP 749
B
 GLY 54TRP 749
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 87 helices in PDB entry 5JMY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
58 72Right-handed alpha
Helix 2
AA2
A
81 94Right-handed alpha
Helix 3
AA3
A
105 122Right-handed alpha
Helix 4
AA4
A
129 144Right-handed alpha
Helix 5
AA5
A
144 152Right-handed alpha
Helix 6
AA6
A
153 160Right-handed alpha
Helix 7
AA7
A
161 164Right-handed 310
Helix 8
AA8
A
166 170Right-handed 310
Helix 9
AA9
A
172 178Right-handed alpha
Helix 10
AB1
A
182 195Right-handed alpha
Helix 11
AB2
A
227 233Right-handed 310
Helix 12
AB3
A
234 236Right-handed 310
Helix 13
AB4
A
237 259Right-handed alpha
Helix 14
AB5
A
264 286Right-handed alpha
Helix 15
AB6
A
288 292Right-handed 310
Helix 16
AB7
A
294 299Right-handed alpha
Helix 17
AB8
A
304 311Right-handed alpha
Helix 18
AB9
A
321 331Right-handed alpha
Helix 19
AC1
A
332 334Right-handed 310
Helix 20
AC2
A
347 359Right-handed alpha
Helix 21
AC3
A
362 379Right-handed alpha
Helix 22
AC4
A
380 382Right-handed 310
Helix 23
AC5
A
383 389Right-handed alpha
Helix 24
AC6
A
390 399Right-handed alpha
Helix 25
AC7
A
405 418Right-handed alpha
Helix 26
AC8
A
418 431Right-handed alpha
Helix 27
AC9
A
435 456Right-handed alpha
Helix 28
AD1
A
461 475Right-handed alpha
Helix 29
AD2
A
483 488Right-handed alpha
Helix 30
AD3
A
488 496Right-handed alpha
Helix 31
AD4
A
505 523Right-handed alpha
Helix 32
AD5
A
557 559Right-handed 310
Helix 33
AD6
A
569 576Right-handed alpha
Helix 34
AD7
A
576 587Right-handed alpha
Helix 35
AD8
A
588 590Right-handed 310
Helix 36
AD9
A
592 596Right-handed 310
Helix 37
AE1
A
607 627Right-handed alpha
Helix 38
AE2
A
630 634Right-handed 310
Helix 39
AE3
A
643 669Right-handed alpha
Helix 40
AE4
A
680 692Right-handed alpha
Helix 41
AE5
A
698 709Right-handed alpha
Helix 42
AE6
A
713 724Right-handed alpha
Helix 43
AE7
A
725 733Right-handed alpha
Helix 44
AE8
B
58 72Right-handed alpha
Helix 45
AE9
B
81 94Right-handed alpha
Helix 46
AF1
B
105 122Right-handed alpha
Helix 47
AF2
B
129 144Right-handed alpha
Helix 48
AF3
B
144 151Right-handed alpha
Helix 49
AF4
B
153 160Right-handed alpha
Helix 50
AF5
B
161 164Right-handed 310
Helix 51
AF6
B
166 170Right-handed 310
Helix 52
AF7
B
172 178Right-handed alpha
Helix 53
AF8
B
182 195Right-handed alpha
Helix 54
AF9
B
227 233Right-handed 310
Helix 55
AG1
B
234 236Right-handed 310
Helix 56
AG2
B
237 259Right-handed alpha
Helix 57
AG3
B
264 286Right-handed alpha
Helix 58
AG4
B
288 292Right-handed 310
Helix 59
AG5
B
294 299Right-handed alpha
Helix 60
AG6
B
304 311Right-handed alpha
Helix 61
AG7
B
321 331Right-handed alpha
Helix 62
AG8
B
332 334Right-handed 310
Helix 63
AG9
B
347 359Right-handed alpha
Helix 64
AH1
B
362 379Right-handed alpha
Helix 65
AH2
B
380 382Right-handed 310
Helix 66
AH3
B
383 389Right-handed alpha
Helix 67
AH4
B
390 399Right-handed alpha
Helix 68
AH5
B
405 418Right-handed alpha
Helix 69
AH6
B
418 431Right-handed alpha
Helix 70
AH7
B
433 455Right-handed alpha
Helix 71
AH8
B
461 475Right-handed alpha
Helix 72
AH9
B
483 488Right-handed alpha
Helix 73
AI1
B
488 496Right-handed alpha
Helix 74
AI2
B
505 522Right-handed alpha
Helix 75
AI3
B
523 525Right-handed 310
Helix 76
AI4
B
557 559Right-handed 310
Helix 77
AI5
B
569 576Right-handed alpha
Helix 78
AI6
B
576 587Right-handed alpha
Helix 79
AI7
B
588 590Right-handed 310
Helix 80
AI8
B
592 596Right-handed 310
Helix 81
AI9
B
607 627Right-handed alpha
Helix 82
AJ1
B
630 634Right-handed 310
Helix 83
AJ2
B
643 669Right-handed alpha
Helix 84
AJ3
B
680 692Right-handed alpha
Helix 85
AJ4
B
698 709Right-handed alpha
Helix 86
AJ5
B
713 724Right-handed alpha
Helix 87
AJ6
B
725 733Right-handed alpha
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There are 8 sheets in PDB entry 5JMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 104first strand
Strand 2
A
695 697anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 207first strand
Strand 2
A
210 219anti-parallel
Strand 3
A
342 345parallel
Strand 4
A
301 303anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
318 319anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 480first strand
Strand 2
A
551 555parallel
Strand 3
A
544 546anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 104first strand
Strand 2
B
695 697anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
201 207first strand
Strand 2
B
210 219anti-parallel
Strand 3
B
342 345parallel
Strand 4
B
301 303anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 315first strand
Strand 2
B
318 319anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
476 480first strand
Strand 2
B
551 555parallel
Strand 3
B
544 546anti-parallel
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