Analysis of interatomic Contacts of Structural Units in PDB entry:
5JNB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JNB entry

There are 8 chains in PDB entry 5JNB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 544	LYS 922
B	GLY 544	ILE 921
C	GLY 544	CYS 918
D	LEU 549	GLU 905
E	THR 177	PRO 222
F	THR 177	PRO 222
G	ILE 193	THR 220
H	PHE 195	PRO 219

There are 60 helices in PDB entry 5JNB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	545	561	Right-handed alpha
Helix 2	AA2	A	563	582	Right-handed alpha
Helix 3	AA3	A	594	597	Right-handed 310
Helix 4	AA4	A	622	636	Right-handed alpha
Helix 5	AA5	A	674	690	Right-handed alpha
Helix 6	AA6	A	692	707	Right-handed alpha
Helix 7	AA7	A	718	733	Right-handed alpha
Helix 8	AA8	A	740	745	Right-handed alpha
Helix 9	AA9	A	754	758	Right-handed 310
Helix 10	AB1	A	775	779	Right-handed 310
Helix 11	AB2	A	780	795	Right-handed alpha
Helix 12	AB3	A	868	870	Right-handed 310
Helix 13	AB4	A	887	910	Right-handed alpha
Helix 14	AB5	A	911	916	Right-handed alpha
Helix 15	AB6	B	545	561	Right-handed alpha
Helix 16	AB7	B	563	582	Right-handed alpha
Helix 17	AB8	B	594	597	Right-handed 310
Helix 18	AB9	B	622	637	Right-handed alpha
Helix 19	AC1	B	674	690	Right-handed alpha
Helix 20	AC2	B	692	707	Right-handed alpha
Helix 21	AC3	B	718	733	Right-handed alpha
Helix 22	AC4	B	740	745	Right-handed alpha
Helix 23	AC5	B	745	750	Right-handed alpha
Helix 24	AC6	B	780	795	Right-handed alpha
Helix 25	AC7	B	868	870	Right-handed 310
Helix 26	AC8	B	887	910	Right-handed alpha
Helix 27	AC9	B	911	916	Right-handed alpha
Helix 28	AD1	C	545	561	Right-handed alpha
Helix 29	AD2	C	563	582	Right-handed alpha
Helix 30	AD3	C	594	597	Right-handed 310
Helix 31	AD4	C	622	636	Right-handed alpha
Helix 32	AD5	C	674	688	Right-handed alpha
Helix 33	AD6	C	692	707	Right-handed alpha
Helix 34	AD7	C	718	733	Right-handed alpha
Helix 35	AD8	C	740	745	Right-handed alpha
Helix 36	AD9	C	754	758	Right-handed 310
Helix 37	AE1	C	775	779	Right-handed alpha
Helix 38	AE2	C	780	795	Right-handed alpha
Helix 39	AE3	C	897	910	Right-handed alpha
Helix 40	AE4	C	911	916	Right-handed alpha
Helix 41	AE5	D	550	561	Right-handed alpha
Helix 42	AE6	D	563	582	Right-handed alpha
Helix 43	AE7	D	594	599	Right-handed alpha
Helix 44	AE8	D	622	636	Right-handed alpha
Helix 45	AE9	D	660	663	Right-handed 310
Helix 46	AF1	D	674	687	Right-handed alpha
Helix 47	AF2	D	692	706	Right-handed alpha
Helix 48	AF3	D	719	733	Right-handed alpha
Helix 49	AF4	D	740	745	Right-handed alpha
Helix 50	AF5	D	754	758	Right-handed 310
Helix 51	AF6	D	781	792	Right-handed alpha
Helix 52	AF7	D	893	902	Right-handed alpha
Helix 53	AF8	E	200	207	Right-handed alpha
Helix 54	AF9	E	209	216	Right-handed alpha
Helix 55	AG1	F	200	208	Right-handed alpha
Helix 56	AG2	F	209	218	Right-handed alpha
Helix 57	AG3	G	200	208	Right-handed alpha
Helix 58	AG4	G	209	216	Right-handed alpha
Helix 59	AG5	H	200	207	Right-handed alpha
Helix 60	AG6	H	209	216	Right-handed alpha

There are 8 sheets in PDB entry 5JNB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	589	593	first strand
Strand 2	A	607	612	anti-parallel
Strand 3	A	667	671	parallel
Strand 4	A	652	658	anti-parallel
Strand 5	A	641	648	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	809	812	first strand
Strand 2	A	801	804	anti-parallel
Strand 3	A	871	874	parallel
Strand 4	A	864	867	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	589	593	first strand
Strand 2	B	607	612	anti-parallel
Strand 3	B	667	671	parallel
Strand 4	B	652	658	anti-parallel
Strand 5	B	641	648	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	809	812	first strand
Strand 2	B	801	804	anti-parallel
Strand 3	B	871	874	parallel
Strand 4	B	864	867	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	589	593	first strand
Strand 2	C	607	612	anti-parallel
Strand 3	C	666	671	parallel
Strand 4	C	653	658	anti-parallel
Strand 5	C	641	648	anti-parallel
Strand 6	F	193	195	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	809	812	first strand
Strand 2	C	801	804	anti-parallel
Strand 3	C	873	874	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	589	593	first strand
Strand 2	D	607	612	anti-parallel
Strand 3	D	666	671	parallel
Strand 4	D	653	658	anti-parallel
Strand 5	D	641	648	anti-parallel
Strand 6	E	193	195	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	810	811	first strand
Strand 2	D	802	804	anti-parallel
Strand 3	D	873	874	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JNB

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JNB