Analysis of interatomic Contacts of Structural Units in PDB entry:
5JNE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JNE entry

There are 8 chains in PDB entry 5JNE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 173	GLU 527
B	HIS 0	SER 156
C	PRO 20	GLY 98
D	MET 1	PHE 254
E	PRO 173	GLU 527
F	MET 1	SER 156
G	THR 22	GLY 98
H	MET 1	ASP 256

There are 44 helices in PDB entry 5JNE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	212	221	Right-handed alpha
Helix 2	AA2	A	281	284	Right-handed 310
Helix 3	AA3	A	315	326	Right-handed alpha
Helix 4	AA4	A	330	348	Right-handed alpha
Helix 5	AA5	A	385	395	Right-handed alpha
Helix 6	AA6	A	408	410	Right-handed 310
Helix 7	AA7	A	415	424	Right-handed alpha
Helix 8	AA8	A	478	489	Right-handed alpha
Helix 9	AA9	A	492	496	Right-handed 310
Helix 10	AB1	B	2	19	Right-handed alpha
Helix 11	AB2	B	94	98	Right-handed 310
Helix 12	AB3	B	108	121	Right-handed alpha
Helix 13	AB4	B	131	140	Right-handed alpha
Helix 14	AB5	B	140	155	Right-handed alpha
Helix 15	AB6	C	44	55	Right-handed alpha
Helix 16	AB7	C	59	61	Right-handed 310
Helix 17	AB8	D	8	18	Right-handed alpha
Helix 18	AB9	D	72	82	Right-handed alpha
Helix 19	AC1	D	141	153	Right-handed alpha
Helix 20	AC2	D	190	194	Right-handed 310
Helix 21	AC3	D	209	216	Right-handed alpha
Helix 22	AC4	D	217	221	Right-handed 310
Helix 23	AC5	E	212	221	Right-handed alpha
Helix 24	AC6	E	281	284	Right-handed 310
Helix 25	AC7	E	315	326	Right-handed alpha
Helix 26	AC8	E	330	349	Right-handed alpha
Helix 27	AC9	E	385	395	Right-handed alpha
Helix 28	AD1	E	408	410	Right-handed 310
Helix 29	AD2	E	415	424	Right-handed alpha
Helix 30	AD3	E	478	489	Right-handed alpha
Helix 31	AD4	E	492	494	Right-handed 310
Helix 32	AD5	F	2	19	Right-handed alpha
Helix 33	AD6	F	94	98	Right-handed 310
Helix 34	AD7	F	108	121	Right-handed alpha
Helix 35	AD8	F	131	140	Right-handed alpha
Helix 36	AD9	F	140	155	Right-handed alpha
Helix 37	AE1	G	45	56	Right-handed alpha
Helix 38	AE2	G	59	61	Right-handed 310
Helix 39	AE3	H	8	18	Right-handed alpha
Helix 40	AE4	H	72	82	Right-handed alpha
Helix 41	AE5	H	141	153	Right-handed alpha
Helix 42	AE6	H	190	194	Right-handed 310
Helix 43	AE7	H	209	216	Right-handed alpha
Helix 44	AE8	H	217	219	Right-handed 310

There are 18 sheets in PDB entry 5JNE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	196	first strand
Strand 2	A	304	313	anti-parallel
Strand 3	A	226	234	anti-parallel
Strand 4	A	278	279	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	209	first strand
Strand 2	A	291	300	anti-parallel
Strand 3	A	252	256	anti-parallel
Strand 4	A	259	260	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	442	first strand
Strand 2	A	431	434	anti-parallel
Strand 3	A	354	358	anti-parallel
Strand 4	C	34	40	anti-parallel
Strand 5	C	23	29	anti-parallel
Strand 6	C	87	93	parallel
Strand 7	C	63	67	anti-parallel
Strand 8	C	70	71	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	384	first strand
Strand 2	A	371	374	anti-parallel
Strand 3	A	412	414	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	473	first strand
Strand 2	A	456	462	anti-parallel
Strand 3	A	520	525	parallel
Strand 4	A	497	500	anti-parallel
Strand 5	A	503	504	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	25	30	first strand
Strand 2	B	36	46	anti-parallel
Strand 3	B	57	63	anti-parallel
Strand 4	B	74	76	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	86	92	anti-parallel
Strand 3	D	98	105	anti-parallel
Strand 4	D	111	117	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	71	first strand
Strand 2	D	25	31	anti-parallel
Strand 3	D	34	40	anti-parallel
Strand 4	D	46	53	anti-parallel
Strand 5	D	245	250	anti-parallel
Strand 6	D	235	240	anti-parallel
Strand 7	D	224	229	anti-parallel
Strand 8	D	135	140	anti-parallel
Strand 9	D	196	199	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	177	182	first strand
Strand 2	D	167	172	anti-parallel
Strand 3	D	157	162	anti-parallel
Strand 4	D	204	208	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	183	196	first strand
Strand 2	E	303	313	anti-parallel
Strand 3	E	226	235	anti-parallel
Strand 4	E	278	279	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	209	first strand
Strand 2	E	291	300	anti-parallel
Strand 3	E	252	256	anti-parallel
Strand 4	E	259	261	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	440	442	first strand
Strand 2	E	431	434	anti-parallel
Strand 3	E	351	358	anti-parallel
Strand 4	G	34	40	anti-parallel
Strand 5	G	23	29	anti-parallel
Strand 6	G	87	93	parallel
Strand 7	G	63	67	anti-parallel
Strand 8	G	70	71	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	383	384	first strand
Strand 2	E	371	374	anti-parallel
Strand 3	E	412	414	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	467	473	first strand
Strand 2	E	456	462	anti-parallel
Strand 3	E	520	526	parallel
Strand 4	E	496	500	anti-parallel
Strand 5	E	503	504	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	25	30	first strand
Strand 2	F	36	46	anti-parallel
Strand 3	F	57	63	anti-parallel
Strand 4	F	74	76	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	59	62	first strand
Strand 2	H	2	5	anti-parallel
Strand 3	H	86	92	anti-parallel
Strand 4	H	98	105	anti-parallel
Strand 5	H	111	117	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	71	first strand
Strand 2	H	25	30	anti-parallel
Strand 3	H	34	40	anti-parallel
Strand 4	H	46	53	anti-parallel
Strand 5	H	244	250	anti-parallel
Strand 6	H	235	241	anti-parallel
Strand 7	H	224	229	anti-parallel
Strand 8	H	135	140	anti-parallel
Strand 9	H	196	199	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	177	182	first strand
Strand 2	H	166	172	anti-parallel
Strand 3	H	157	163	anti-parallel
Strand 4	H	203	208	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JNE

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JNE