Analysis of interatomic Contacts of Structural Units in PDB entry:
5JNF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JNF entry

There are 4 chains in PDB entry 5JNF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	MET 1	ASP 585
A	MET 1	ASP 585
B	MET 1	ASP 585
D	MET 1	ASP 585

There are 80 helices in PDB entry 5JNF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	15	24	Right-handed alpha
Helix 2	AA2	C	39	43	Right-handed 310
Helix 3	AA3	C	58	65	Right-handed alpha
Helix 4	AA4	C	84	92	Right-handed alpha
Helix 5	AA5	C	125	150	Right-handed alpha
Helix 6	AA6	C	166	177	Right-handed 310
Helix 7	AA7	C	180	192	Right-handed alpha
Helix 8	AA8	C	204	216	Right-handed alpha
Helix 9	AA9	C	231	248	Right-handed alpha
Helix 10	AB1	C	263	277	Right-handed alpha
Helix 11	AB2	C	288	299	Right-handed alpha
Helix 12	AB3	C	310	315	Right-handed 310
Helix 13	AB4	C	325	329	Right-handed 310
Helix 14	AB5	C	365	380	Right-handed alpha
Helix 15	AB6	C	395	409	Right-handed alpha
Helix 16	AB7	C	416	420	Right-handed 310
Helix 17	AB8	C	422	434	Right-handed alpha
Helix 18	AB9	C	442	449	Right-handed alpha
Helix 19	AC1	C	483	487	Right-handed 310
Helix 20	AC2	C	545	552	Right-handed alpha
Helix 21	AC3	A	15	24	Right-handed alpha
Helix 22	AC4	A	39	43	Right-handed 310
Helix 23	AC5	A	58	65	Right-handed alpha
Helix 24	AC6	A	84	92	Right-handed alpha
Helix 25	AC7	A	125	150	Right-handed alpha
Helix 26	AC8	A	166	177	Right-handed 310
Helix 27	AC9	A	180	192	Right-handed alpha
Helix 28	AD1	A	204	216	Right-handed alpha
Helix 29	AD2	A	231	248	Right-handed alpha
Helix 30	AD3	A	263	277	Right-handed alpha
Helix 31	AD4	A	288	299	Right-handed alpha
Helix 32	AD5	A	310	315	Right-handed 310
Helix 33	AD6	A	325	329	Right-handed 310
Helix 34	AD7	A	365	380	Right-handed alpha
Helix 35	AD8	A	395	407	Right-handed alpha
Helix 36	AD9	A	416	420	Right-handed 310
Helix 37	AE1	A	422	434	Right-handed alpha
Helix 38	AE2	A	442	449	Right-handed alpha
Helix 39	AE3	A	483	487	Right-handed 310
Helix 40	AE4	A	545	552	Right-handed alpha
Helix 41	AE5	B	15	24	Right-handed alpha
Helix 42	AE6	B	39	43	Right-handed 310
Helix 43	AE7	B	58	65	Right-handed alpha
Helix 44	AE8	B	84	92	Right-handed alpha
Helix 45	AE9	B	125	150	Right-handed alpha
Helix 46	AF1	B	166	174	Right-handed 310
Helix 47	AF2	B	180	192	Right-handed alpha
Helix 48	AF3	B	204	214	Right-handed alpha
Helix 49	AF4	B	231	248	Right-handed alpha
Helix 50	AF5	B	263	277	Right-handed alpha
Helix 51	AF6	B	288	299	Right-handed alpha
Helix 52	AF7	B	310	315	Right-handed 310
Helix 53	AF8	B	325	329	Right-handed 310
Helix 54	AF9	B	365	379	Right-handed alpha
Helix 55	AG1	B	396	402	Right-handed alpha
Helix 56	AG2	B	402	408	Right-handed alpha
Helix 57	AG3	B	422	434	Right-handed alpha
Helix 58	AG4	B	442	449	Right-handed alpha
Helix 59	AG5	B	483	487	Right-handed 310
Helix 60	AG6	B	545	552	Right-handed alpha
Helix 61	AG7	D	15	24	Right-handed alpha
Helix 62	AG8	D	39	43	Right-handed 310
Helix 63	AG9	D	58	65	Right-handed alpha
Helix 64	AH1	D	84	92	Right-handed alpha
Helix 65	AH2	D	125	150	Right-handed alpha
Helix 66	AH3	D	166	177	Right-handed 310
Helix 67	AH4	D	180	192	Right-handed alpha
Helix 68	AH5	D	204	216	Right-handed alpha
Helix 69	AH6	D	231	248	Right-handed alpha
Helix 70	AH7	D	263	277	Right-handed alpha
Helix 71	AH8	D	288	299	Right-handed alpha
Helix 72	AH9	D	310	315	Right-handed 310
Helix 73	AI1	D	325	329	Right-handed 310
Helix 74	AI2	D	365	380	Right-handed alpha
Helix 75	AI3	D	395	408	Right-handed alpha
Helix 76	AI4	D	416	420	Right-handed 310
Helix 77	AI5	D	422	434	Right-handed alpha
Helix 78	AI6	D	442	449	Right-handed alpha
Helix 79	AI7	D	483	487	Right-handed 310
Helix 80	AI8	D	545	552	Right-handed alpha

There are 32 sheets in PDB entry 5JNF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	31	first strand
Strand 2	C	3	7	parallel
Strand 3	C	47	51	parallel
Strand 4	C	69	73	parallel
Strand 5	C	97	102	anti-parallel
Strand 6	C	112	117	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	81	82	first strand
Strand 2	C	164	165	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	227	230	first strand
Strand 2	C	220	224	anti-parallel
Strand 3	C	411	414	parallel
Strand 4	C	386	389	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	282	first strand
Strand 2	C	255	259	parallel
Strand 3	C	303	306	parallel
Strand 4	C	319	322	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	351	first strand
Strand 2	C	359	364	anti-parallel
Strand 3	C	541	542	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	437	441	first strand
Strand 2	C	458	462	parallel
Strand 3	C	476	481	parallel
Strand 4	C	491	495	anti-parallel
Strand 5	C	506	507	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	511	516	first strand
Strand 2	C	529	535	anti-parallel
Strand 3	C	562	572	anti-parallel
Strand 4	C	553	555	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	511	516	first strand
Strand 2	C	529	535	anti-parallel
Strand 3	C	562	572	anti-parallel
Strand 4	C	578	583	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	31	first strand
Strand 2	A	3	7	parallel
Strand 3	A	47	51	parallel
Strand 4	A	69	73	parallel
Strand 5	A	97	102	anti-parallel
Strand 6	A	112	117	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	164	165	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	230	first strand
Strand 2	A	220	224	anti-parallel
Strand 3	A	411	414	parallel
Strand 4	A	386	389	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	282	first strand
Strand 2	A	255	259	parallel
Strand 3	A	303	306	parallel
Strand 4	A	319	322	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	350	first strand
Strand 2	A	360	364	anti-parallel
Strand 3	A	541	542	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	441	first strand
Strand 2	A	458	462	parallel
Strand 3	A	476	481	parallel
Strand 4	A	491	495	anti-parallel
Strand 5	A	506	507	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	516	first strand
Strand 2	A	529	535	anti-parallel
Strand 3	A	562	572	anti-parallel
Strand 4	A	553	555	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	516	first strand
Strand 2	A	529	535	anti-parallel
Strand 3	A	562	572	anti-parallel
Strand 4	A	578	583	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	4	7	parallel
Strand 3	B	47	51	parallel
Strand 4	B	69	73	parallel
Strand 5	B	97	102	anti-parallel
Strand 6	B	112	117	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	164	165	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	230	first strand
Strand 2	B	220	224	anti-parallel
Strand 3	B	411	414	parallel
Strand 4	B	386	389	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	282	first strand
Strand 2	B	255	259	parallel
Strand 3	B	303	306	parallel
Strand 4	B	319	322	parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	350	first strand
Strand 2	B	360	364	anti-parallel
Strand 3	B	541	542	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	441	first strand
Strand 2	B	458	462	parallel
Strand 3	B	476	481	parallel
Strand 4	B	491	494	anti-parallel
Strand 5	B	506	507	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	516	first strand
Strand 2	B	529	535	anti-parallel
Strand 3	B	562	572	anti-parallel
Strand 4	B	553	555	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	516	first strand
Strand 2	B	529	535	anti-parallel
Strand 3	B	562	572	anti-parallel
Strand 4	B	578	583	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	31	first strand
Strand 2	D	3	7	parallel
Strand 3	D	47	51	parallel
Strand 4	D	69	73	parallel
Strand 5	D	97	102	anti-parallel
Strand 6	D	112	117	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	82	first strand
Strand 2	D	164	165	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	227	230	first strand
Strand 2	D	220	224	anti-parallel
Strand 3	D	411	414	parallel
Strand 4	D	386	389	parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	279	282	first strand
Strand 2	D	255	259	parallel
Strand 3	D	303	306	parallel
Strand 4	D	319	322	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	345	351	first strand
Strand 2	D	359	364	anti-parallel
Strand 3	D	541	542	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	437	441	first strand
Strand 2	D	458	462	parallel
Strand 3	D	476	481	parallel
Strand 4	D	491	495	anti-parallel
Strand 5	D	506	507	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	511	516	first strand
Strand 2	D	529	535	anti-parallel
Strand 3	D	562	572	anti-parallel
Strand 4	D	553	555	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	511	516	first strand
Strand 2	D	529	535	anti-parallel
Strand 3	D	562	572	anti-parallel
Strand 4	D	578	583	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JNF

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JNF