Analysis of interatomic Contacts of Structural Units in PDB entry:
5JNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JNM entry

There is 1 chain in PDB entry 5JNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR -8SER 368
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 5JNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-8 -3Right-handed alpha
Helix 2
AA2
A
9 15Right-handed alpha
Helix 3
AA3
A
15 23Right-handed alpha
Helix 4
AA4
A
33 44Right-handed alpha
Helix 5
AA5
A
72 82Right-handed alpha
Helix 6
AA6
A
90 92Right-handed 310
Helix 7
AA7
A
93 106Right-handed alpha
Helix 8
AA8
A
122 136Right-handed alpha
Helix 9
AA9
A
193 218Right-handed alpha
Helix 10
AB1
A
222 228Right-handed alpha
Helix 11
AB2
A
229 251Right-handed alpha
Helix 12
AB3
A
254 270Right-handed alpha
Helix 13
AB4
A
277 282Right-handed alpha
Helix 14
AB5
A
284 289Right-handed alpha
Helix 15
AB6
A
295 305Right-handed alpha
Helix 16
AB7
A
309 322Right-handed alpha
Helix 17
AB8
A
327 341Right-handed alpha
Helix 18
AB9
A
341 350Right-handed alpha
Helix 19
AC1
A
353 367Right-handed alpha
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There are 3 sheets in PDB entry 5JNM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
26 31parallel
Strand 3
A
2 6parallel
Strand 4
A
84 87parallel
Strand 5
A
112 116parallel
Strand 6
A
142 144parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 60first strand
Strand 2
A
46 50anti-parallel
Strand 3
A
164 166parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
171 175anti-parallel
Strand 3
A
188 190parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il