Analysis of interatomic Contacts of Structural Units in PDB entry:
5JNU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JNU entry

There are 2 chains in PDB entry 5JNU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 4THR 156
B
 GLY 4THR 156
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5JNU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 33Right-handed alpha
Helix 2
AA2
A
35 37Right-handed 310
Helix 3
AA3
A
56 66Right-handed alpha
Helix 4
AA4
A
78 85Right-handed alpha
Helix 5
AA5
A
92 104Right-handed alpha
Helix 6
AA6
A
117 120Right-handed 310
Helix 7
AA7
A
129 133Right-handed 310
Helix 8
AA8
A
134 156Right-handed alpha
Helix 9
AA9
B
17 33Right-handed alpha
Helix 10
AB1
B
35 37Right-handed 310
Helix 11
AB2
B
56 66Right-handed alpha
Helix 12
AB3
B
80 85Right-handed alpha
Helix 13
AB4
B
92 104Right-handed alpha
Helix 14
AB5
B
117 120Right-handed 310
Helix 15
AB6
B
134 155Right-handed alpha
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There are 2 sheets in PDB entry 5JNU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 45first strand
Strand 2
A
6 12parallel
Strand 3
A
87 90parallel
Strand 4
A
112 115parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 45first strand
Strand 2
B
6 12parallel
Strand 3
B
87 90parallel
Strand 4
B
112 115parallel
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