Analysis of interatomic Contacts of Structural Units in PDB entry:
5JNX

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JNX entry

There are 4 chains in PDB entry 5JNX (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 23	ILE 1251
C	ARG 31	GLN 188
D	PRO 509	GLY 598
E	ARG 31	PHE 88

There are 61 helices in PDB entry 5JNX. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	54	Right-handed 310
Helix 2	AA2	A	55	63	Right-handed alpha
Helix 3	AA3	A	64	67	Right-handed 310
Helix 4	AA4	A	76	86	Right-handed alpha
Helix 5	AA5	A	87	95	Right-handed alpha
Helix 6	AA6	A	97	114	Right-handed alpha
Helix 7	AA7	A	116	119	Right-handed 310
Helix 8	AA8	A	149	161	Right-handed alpha
Helix 9	AA9	A	172	177	Right-handed alpha
Helix 10	AB1	A	185	194	Right-handed alpha
Helix 11	AB2	A	195	199	Right-handed 310
Helix 12	AB3	A	260	288	Right-handed alpha
Helix 13	AB4	A	331	348	Right-handed alpha
Helix 14	AB5	A	351	369	Right-handed alpha
Helix 15	AB6	A	387	400	Right-handed alpha
Helix 16	AB7	A	432	435	Right-handed 310
Helix 17	AB8	A	436	452	Right-handed alpha
Helix 18	AB9	A	464	468	Right-handed alpha
Helix 19	AC1	A	483	489	Right-handed 310
Helix 20	AC2	A	491	497	Right-handed alpha
Helix 21	AC3	A	510	517	Right-handed alpha
Helix 22	AC4	A	542	545	Right-handed 310
Helix 23	AC5	A	554	558	Right-handed 310
Helix 24	AC6	A	573	594	Right-handed alpha
Helix 25	AC7	A	606	617	Right-handed alpha
Helix 26	AC8	A	618	638	Right-handed alpha
Helix 27	AC9	A	644	666	Right-handed alpha
Helix 28	AD1	A	673	698	Right-handed alpha
Helix 29	AD2	A	705	714	Right-handed alpha
Helix 30	AD3	A	716	732	Right-handed alpha
Helix 31	AD4	A	741	772	Right-handed alpha
Helix 32	AD5	A	805	830	Right-handed alpha
Helix 33	AD6	A	833	851	Right-handed alpha
Helix 34	AD7	A	864	876	Right-handed alpha
Helix 35	AD8	A	893	912	Right-handed alpha
Helix 36	AD9	A	930	938	Right-handed alpha
Helix 37	AE1	A	987	995	Right-handed alpha
Helix 38	AE2	A	997	1005	Right-handed alpha
Helix 39	AE3	A	1047	1069	Right-handed alpha
Helix 40	AE4	A	1084	1089	Right-handed alpha
Helix 41	AE5	A	1090	1092	Right-handed 310
Helix 42	AE6	A	1093	1113	Right-handed alpha
Helix 43	AE7	A	1121	1144	Right-handed alpha
Helix 44	AE8	A	1150	1174	Right-handed alpha
Helix 45	AE9	A	1184	1214	Right-handed alpha
Helix 46	AF1	A	1219	1251	Right-handed alpha
Helix 47	AF2	C	59	61	Right-handed 310
Helix 48	AF3	C	78	83	Right-handed alpha
Helix 49	AF4	D	538	541	Right-handed 310
Helix 50	AF5	D	551	576	Right-handed alpha
Helix 51	AF6	D	583	596	Right-handed alpha
Helix 52	AF7	E	59	61	Right-handed 310
Helix 53	AF8	E	78	83	Right-handed alpha
Helix 54	AF9	F	538	541	Right-handed 310
Helix 55	AG1	F	551	576	Right-handed alpha
Helix 56	AG2	F	583	596	Right-handed alpha
Helix 57	AG3	G	59	61	Right-handed 310
Helix 58	AG4	G	78	83	Right-handed alpha
Helix 59	AG5	H	538	541	Right-handed 310
Helix 60	AG6	H	551	576	Right-handed alpha
Helix 61	AG7	H	583	596	Right-handed alpha

There are 24 sheets in PDB entry 5JNX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	35	first strand
Strand 2	A	38	43	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	72	73	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	130	first strand
Strand 2	A	137	148	anti-parallel
Strand 3	A	204	209	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	547	548	first strand
Strand 2	A	560	567	anti-parallel
Strand 3	A	404	411	anti-parallel
Strand 4	A	600	602	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	419	first strand
Strand 2	A	430	431	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	457	first strand
Strand 2	A	460	463	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	499	500	first strand
Strand 2	A	505	507	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	915	916	first strand
Strand 2	A	919	920	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	944	945	first strand
Strand 2	A	954	955	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	46	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	177	185	parallel
Strand 4	C	63	69	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	46	first strand
Strand 2	C	35	38	anti-parallel
Strand 3	C	177	185	parallel
Strand 4	C	159	161	anti-parallel
Strand 5	C	165	167	anti-parallel
Strand 6	C	96	98	anti-parallel
Strand 7	D	580	581	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	89	first strand
Strand 2	C	151	154	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	103	first strand
Strand 2	D	515	520	anti-parallel
Strand 3	D	543	548	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	114	first strand
Strand 2	C	135	144	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	46	first strand
Strand 2	E	35	38	anti-parallel
Strand 3	E	177	185	parallel
Strand 4	E	63	69	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	46	first strand
Strand 2	E	35	38	anti-parallel
Strand 3	E	177	185	parallel
Strand 4	E	159	161	anti-parallel
Strand 5	E	165	167	anti-parallel
Strand 6	E	96	98	anti-parallel
Strand 7	F	580	581	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	86	89	first strand
Strand 2	E	151	154	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	103	first strand
Strand 2	F	515	520	anti-parallel
Strand 3	F	543	548	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	114	first strand
Strand 2	E	135	144	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	46	first strand
Strand 2	G	35	38	anti-parallel
Strand 3	G	177	185	parallel
Strand 4	G	63	69	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	46	first strand
Strand 2	G	35	38	anti-parallel
Strand 3	G	177	185	parallel
Strand 4	G	159	161	anti-parallel
Strand 5	G	165	167	anti-parallel
Strand 6	G	96	98	anti-parallel
Strand 7	H	580	581	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	86	89	first strand
Strand 2	G	151	154	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	101	103	first strand
Strand 2	H	515	520	anti-parallel
Strand 3	H	543	548	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	105	114	first strand
Strand 2	G	135	144	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JNX

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JNX