Analysis of interatomic Contacts of Structural Units in PDB entry:
5JO2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JO2 entry

There are 2 chains in PDB entry 5JO2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 24THR 205
B
 CYS 186LYS 506
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5JO2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 41Right-handed alpha
Helix 2
AA2
A
61 70Right-handed alpha
Helix 3
AA3
A
74 78Right-handed 310
Helix 4
AA4
A
181 204Right-handed alpha
Helix 5
AA5
B
250 258Right-handed alpha
Helix 6
AA6
B
259 267Right-handed alpha
Helix 7
AA7
B
283 303Right-handed alpha
Helix 8
AA8
B
368 378Right-handed alpha
Helix 9
AA9
B
403 406Right-handed 310
Helix 10
AB1
B
431 436Right-handed alpha
Helix 11
AB2
B
439 459Right-handed alpha
Helix 12
AB3
B
471 488Right-handed alpha
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There are 6 sheets in PDB entry 5JO2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 58first strand
Strand 2
A
161 175anti-parallel
Strand 3
A
145 157anti-parallel
Strand 4
A
129 136anti-parallel
Strand 5
A
115 124anti-parallel
Strand 6
A
102 107anti-parallel
Strand 7
A
82 87anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 195first strand
Strand 2
B
494 500anti-parallel
Strand 3
B
424 430anti-parallel
Strand 4
B
348 353anti-parallel
Strand 5
B
356 359anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 214first strand
Strand 2
B
235 245anti-parallel
Strand 3
B
326 327anti-parallel
Strand 4
B
400 401anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 214first strand
Strand 2
B
235 245anti-parallel
Strand 3
B
329 334anti-parallel
Strand 4
B
338 344anti-parallel
Strand 5
B
414 419anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 308first strand
Strand 2
B
315 316anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 384first strand
Strand 2
B
388 390anti-parallel
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