Analysis of interatomic Contacts of Structural Units in PDB entry:
5JO7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JO7 entry

There are 3 chains in PDB entry 5JO7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 37ILE 555
B
 ASN 38ILE 555
C
 GLN 39LEU 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are129 helices in PDB entry 5JO7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 61Right-handed alpha
Helix 2
AA2
A
66 80Right-handed alpha
Helix 3
AA3
A
82 85Right-handed 310
Helix 4
AA4
A
86 101Right-handed alpha
Helix 5
AA5
A
106 110Right-handed 310
Helix 6
AA6
A
111 125Right-handed alpha
Helix 7
AA7
A
130 138Right-handed 310
Helix 8
AA8
A
145 150Right-handed 310
Helix 9
AA9
A
151 163Right-handed alpha
Helix 10
AB1
A
169 187Right-handed alpha
Helix 11
AB2
A
188 190Right-handed 310
Helix 12
AB3
A
193 204Right-handed alpha
Helix 13
AB4
A
205 209Right-handed 310
Helix 14
AB5
A
210 225Right-handed alpha
Helix 15
AB6
A
229 262Right-handed alpha
Helix 16
AB7
A
262 267Right-handed alpha
Helix 17
AB8
A
273 285Right-handed alpha
Helix 18
AB9
A
287 289Right-handed 310
Helix 19
AC1
A
290 313Right-handed alpha
Helix 20
AC2
A
316 330Right-handed alpha
Helix 21
AC3
A
331 338Right-handed 310
Helix 22
AC4
A
339 362Right-handed alpha
Helix 23
AC5
A
363 364Right-handed 310
Helix 24
AC6
A
365 367Right-handed 310
Helix 25
AC7
A
368 393Right-handed alpha
Helix 26
AC8
A
397 406Right-handed alpha
Helix 27
AC9
A
407 409Right-handed 310
Helix 28
AD1
A
410 418Right-handed alpha
Helix 29
AD2
A
426 435Right-handed alpha
Helix 30
AD3
A
437 460Right-handed alpha
Helix 31
AD4
A
467 477Right-handed alpha
Helix 32
AD5
A
479 502Right-handed alpha
Helix 33
AD6
A
509 527Right-handed alpha
Helix 34
AD7
A
541 550Right-handed alpha
Helix 35
AD8
B
39 60Right-handed alpha
Helix 36
AD9
B
66 80Right-handed alpha
Helix 37
AE1
B
82 85Right-handed 310
Helix 38
AE2
B
86 101Right-handed alpha
Helix 39
AE3
B
106 110Right-handed 310
Helix 40
AE4
B
111 125Right-handed alpha
Helix 41
AE5
B
130 138Right-handed 310
Helix 42
AE6
B
145 150Right-handed 310
Helix 43
AE7
B
151 163Right-handed alpha
Helix 44
AE8
B
169 187Right-handed alpha
Helix 45
AE9
B
188 190Right-handed 310
Helix 46
AF1
B
191 204Right-handed alpha
Helix 47
AF2
B
210 225Right-handed alpha
Helix 48
AF3
B
229 262Right-handed alpha
Helix 49
AF4
B
262 267Right-handed alpha
Helix 50
AF5
B
273 285Right-handed alpha
Helix 51
AF6
B
287 289Right-handed 310
Helix 52
AF7
B
290 315Right-handed alpha
Helix 53
AF8
B
316 330Right-handed alpha
Helix 54
AF9
B
331 338Right-handed 310
Helix 55
AG1
B
339 362Right-handed alpha
Helix 56
AG2
B
363 364Right-handed 310
Helix 57
AG3
B
365 367Right-handed 310
Helix 58
AG4
B
368 393Right-handed alpha
Helix 59
AG5
B
397 409Right-handed alpha
Helix 60
AG6
B
410 419Right-handed alpha
Helix 61
AG7
B
426 434Right-handed alpha
Helix 62
AG8
B
437 457Right-handed alpha
Helix 63
AG9
B
467 477Right-handed alpha
Helix 64
AH1
B
479 502Right-handed alpha
Helix 65
AH2
B
509 527Right-handed alpha
Helix 66
AH3
B
541 550Right-handed alpha
Helix 67
AH4
C
40 62Right-handed alpha
Helix 68
AH5
C
66 80Right-handed alpha
Helix 69
AH6
C
82 85Right-handed 310
Helix 70
AH7
C
86 101Right-handed alpha
Helix 71
AH8
C
107 110Right-handed 310
Helix 72
AH9
C
111 125Right-handed alpha
Helix 73
AI1
C
130 138Right-handed 310
Helix 74
AI2
C
145 150Right-handed 310
Helix 75
AI3
C
151 163Right-handed alpha
Helix 76
AI4
C
169 187Right-handed alpha
Helix 77
AI5
C
188 190Right-handed 310
Helix 78
AI6
C
193 204Right-handed alpha
Helix 79
AI7
C
210 225Right-handed alpha
Helix 80
AI8
C
229 262Right-handed alpha
Helix 81
AI9
C
262 267Right-handed alpha
Helix 82
AJ1
C
273 285Right-handed alpha
Helix 83
AJ2
C
287 289Right-handed 310
Helix 84
AJ3
C
290 312Right-handed alpha
Helix 85
AJ4
C
316 330Right-handed alpha
Helix 86
AJ5
C
331 338Right-handed 310
Helix 87
AJ6
C
339 362Right-handed alpha
Helix 88
AJ7
C
363 364Right-handed 310
Helix 89
AJ8
C
365 367Right-handed 310
Helix 90
AJ9
C
368 393Right-handed alpha
Helix 91
AK1
C
397 406Right-handed alpha
Helix 92
AK2
C
410 418Right-handed alpha
Helix 93
AK3
C
426 435Right-handed alpha
Helix 94
AK4
C
437 456Right-handed alpha
Helix 95
AK5
C
468 477Right-handed alpha
Helix 96
AK6
C
478 502Right-handed alpha
Helix 97
AK7
C
509 527Right-handed alpha
Helix 98
AK8
C
541 550Right-handed alpha
Helix 99
AK9
D
47 60Right-handed alpha
Helix 100
AL1
D
66 80Right-handed alpha
Helix 101
AL2
D
82 85Right-handed 310
Helix 102
AL3
D
86 101Right-handed alpha
Helix 103
AL4
D
112 125Right-handed alpha
Helix 104
AL5
D
130 138Right-handed 310
Helix 105
AL6
D
145 150Right-handed 310
Helix 106
AL7
D
151 163Right-handed alpha
Helix 107
AL8
D
169 187Right-handed alpha
Helix 108
AL9
D
188 190Right-handed 310
Helix 109
AM1
D
191 204Right-handed alpha
Helix 110
AM2
D
210 225Right-handed alpha
Helix 111
AM3
D
229 262Right-handed alpha
Helix 112
AM4
D
262 267Right-handed alpha
Helix 113
AM5
D
273 285Right-handed alpha
Helix 114
AM6
D
287 289Right-handed 310
Helix 115
AM7
D
290 312Right-handed alpha
Helix 116
AM8
D
316 330Right-handed alpha
Helix 117
AM9
D
331 338Right-handed 310
Helix 118
AN1
D
339 362Right-handed alpha
Helix 119
AN2
D
363 364Right-handed 310
Helix 120
AN3
D
365 367Right-handed 310
Helix 121
AN4
D
368 393Right-handed alpha
Helix 122
AN5
D
397 409Right-handed alpha
Helix 123
AN6
D
410 418Right-handed alpha
Helix 124
AN7
D
426 435Right-handed alpha
Helix 125
AN8
D
437 456Right-handed alpha
Helix 126
AN9
D
467 477Right-handed alpha
Helix 127
AO1
D
479 502Right-handed alpha
Helix 128
AO2
D
509 527Right-handed alpha
Helix 129
AO3
D
541 550Right-handed alpha
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There are no sheets in PDB entry 5JO7
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