Analysis of interatomic Contacts of Structural Units in PDB entry:
5JO9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JO9 entry

There is 1 chain in PDB entry 5JO9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4LEU 242
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5JO9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 31Right-handed alpha
Helix 2
AA2
A
40 51Right-handed alpha
Helix 3
AA3
A
64 79Right-handed alpha
Helix 4
AA4
A
101 113Right-handed alpha
Helix 5
AA5
A
113 131Right-handed alpha
Helix 6
AA6
A
140 145Right-handed 310
Helix 7
AA7
A
150 169Right-handed alpha
Helix 8
AA8
A
170 174Right-handed 310
Helix 9
AA9
A
188 194Right-handed 310
Helix 10
AB1
A
200 204Right-handed 310
Helix 11
AB2
A
210 223Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5JO9.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 59first strand
Strand 2
A
32 38parallel
Strand 3
A
8 13parallel
Strand 4
A
82 87parallel
Strand 5
A
133 138parallel
Strand 6
A
176 183parallel
Strand 7
A
234 235parallel
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