Analysis of interatomic Contacts of Structural Units in PDB entry:
5JON


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JON entry

There are 2 chains in PDB entry 5JON (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE -367ASP 634
B
 LYS -368ILE 630
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 5JON. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-353 -337Right-handed alpha
Helix 2
AA2
A
-327 -318Right-handed alpha
Helix 3
AA3
A
-303 -296Right-handed alpha
Helix 4
AA4
A
-287 -282Right-handed alpha
Helix 5
AA5
A
-279 -272Right-handed alpha
Helix 6
AA6
A
-241 -239Right-handed 310
Helix 7
AA7
A
-238 -228Right-handed alpha
Helix 8
AA8
A
-216 -205Right-handed alpha
Helix 9
AA9
A
-184 -168Right-handed alpha
Helix 10
AB1
A
-160 -150Right-handed alpha
Helix 11
AB2
A
-141 -139Right-handed 310
Helix 12
AB3
A
-138 -130Right-handed alpha
Helix 13
AB4
A
-97 -86Right-handed alpha
Helix 14
AB5
A
-83 -72Right-handed alpha
Helix 15
AB6
A
-65 -57Right-handed alpha
Helix 16
AB7
A
-55 -42Right-handed alpha
Helix 17
AB8
A
-34 -17Right-handed alpha
Helix 18
AB9
A
-13 495Right-handed alpha
Helix 19
AC1
A
496 515Right-handed alpha
Helix 20
AC2
A
516 519Right-handed 310
Helix 21
AC3
A
522 531Right-handed alpha
Helix 22
AC4
A
581 586Right-handed 310
Helix 23
AC5
A
608 618Right-handed alpha
Helix 24
AC6
A
618 632Right-handed alpha
Helix 25
AC7
B
-353 -337Right-handed alpha
Helix 26
AC8
B
-327 -317Right-handed alpha
Helix 27
AC9
B
-303 -296Right-handed alpha
Helix 28
AD1
B
-287 -282Right-handed alpha
Helix 29
AD2
B
-279 -273Right-handed alpha
Helix 30
AD3
B
-241 -239Right-handed 310
Helix 31
AD4
B
-238 -228Right-handed alpha
Helix 32
AD5
B
-216 -213Right-handed 310
Helix 33
AD6
B
-212 -205Right-handed alpha
Helix 34
AD7
B
-184 -168Right-handed alpha
Helix 35
AD8
B
-160 -150Right-handed alpha
Helix 36
AD9
B
-141 -139Right-handed 310
Helix 37
AE1
B
-138 -130Right-handed alpha
Helix 38
AE2
B
-97 -86Right-handed alpha
Helix 39
AE3
B
-83 -74Right-handed alpha
Helix 40
AE4
B
-65 -57Right-handed alpha
Helix 41
AE5
B
-55 -42Right-handed alpha
Helix 42
AE6
B
-34 -17Right-handed alpha
Helix 43
AE7
B
-13 495Right-handed alpha
Helix 44
AE8
B
496 515Right-handed alpha
Helix 45
AE9
B
515 520Right-handed alpha
Helix 46
AF1
B
522 532Right-handed alpha
Helix 47
AF2
B
581 587Right-handed 310
Helix 48
AF3
B
608 618Right-handed alpha
Helix 49
AF4
B
618 630Right-handed alpha
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There are 14 sheets in PDB entry 5JON. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-334 -331first strand
Strand 2
A
-362 -359parallel
Strand 3
A
-310 -306parallel
Strand 4
A
-111 -103anti-parallel
Strand 5
A
-263 -258anti-parallel
Strand 6
A
-68 -67anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-334 -331first strand
Strand 2
A
-362 -359parallel
Strand 3
A
-310 -306parallel
Strand 4
A
-111 -103anti-parallel
Strand 5
A
-41 -40parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-271 -270first strand
Strand 2
A
-267 -266anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-224 -222first strand
Strand 2
A
-147 -142parallel
Strand 3
A
-255 -251anti-parallel
Strand 4
A
-127 -124anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
-202 -197first strand
Strand 2
A
-194 -187anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
534 538first strand
Strand 2
A
601 607anti-parallel
Strand 3
A
553 559anti-parallel
Strand 4
A
579 580anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
543 545first strand
Strand 2
A
594 597anti-parallel
Strand 3
A
562 565anti-parallel
Strand 4
A
571 574anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-335 -331first strand
Strand 2
B
-363 -359parallel
Strand 3
B
-310 -306parallel
Strand 4
B
-111 -103anti-parallel
Strand 5
B
-263 -258anti-parallel
Strand 6
B
-68 -67anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-335 -331first strand
Strand 2
B
-363 -359parallel
Strand 3
B
-310 -306parallel
Strand 4
B
-111 -103anti-parallel
Strand 5
B
-41 -40parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-271 -270first strand
Strand 2
B
-267 -266anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-224 -222first strand
Strand 2
B
-147 -142parallel
Strand 3
B
-255 -251anti-parallel
Strand 4
B
-127 -124anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
-202 -198first strand
Strand 2
B
-193 -187anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
534 538first strand
Strand 2
B
601 607anti-parallel
Strand 3
B
553 559anti-parallel
Strand 4
B
579 580anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
543 545first strand
Strand 2
B
594 597anti-parallel
Strand 3
B
562 565anti-parallel
Strand 4
B
571 574anti-parallel
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