Analysis of interatomic Contacts of Structural Units in PDB entry:
5JOS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JOS entry

There is 1 chain in PDB entry 5JOS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 7LEU 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5JOS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 23Right-handed alpha
Helix 2
AA2
A
47 61Right-handed alpha
Helix 3
AA3
A
70 72Right-handed 310
Helix 4
AA4
A
73 80Right-handed alpha
Helix 5
AA5
A
93 98Right-handed alpha
Helix 6
AA6
A
118 120Right-handed 310
Helix 7
AA7
A
125 130Right-handed alpha
Helix 8
AA8
A
142 152Right-handed alpha
Helix 9
AA9
A
165 172Right-handed alpha
Helix 10
AB1
A
182 191Right-handed alpha
Helix 11
AB2
A
217 234Right-handed alpha
Helix 12
AB3
A
235 246Right-handed alpha
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There are 5 sheets in PDB entry 5JOS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 68first strand
Strand 2
A
24 29parallel
Strand 3
A
85 86parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
45 46anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
212 213anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 159first strand
Strand 2
A
135 138parallel
Strand 3
A
177 181parallel
Strand 4
A
107 116anti-parallel
Strand 5
A
195 197anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 159first strand
Strand 2
A
135 138parallel
Strand 3
A
177 181parallel
Strand 4
A
107 116anti-parallel
Strand 5
A
205 209anti-parallel
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