Analysis of interatomic Contacts of Structural Units in PDB entry:
5JOV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JOV entry

There is 1 chain in PDB entry 5JOV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1LEU 954
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5JOV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 7Right-handed alpha
Helix 2
AA2
A
20 24Right-handed 310
Helix 3
AA3
A
217 220Right-handed alpha
Helix 4
AA4
A
258 263Right-handed 310
Helix 5
AA5
A
357 362Right-handed alpha
Helix 6
AA6
A
383 396Right-handed alpha
Helix 7
AA7
A
402 406Right-handed 310
Helix 8
AA8
A
417 432Right-handed alpha
Helix 9
AA9
A
446 450Right-handed 310
Helix 10
AB1
A
462 473Right-handed alpha
Helix 11
AB2
A
489 498Right-handed alpha
Helix 12
AB3
A
503 508Right-handed alpha
Helix 13
AB4
A
527 542Right-handed alpha
Helix 14
AB5
A
543 546Right-handed 310
Helix 15
AB6
A
564 572Right-handed alpha
Helix 16
AB7
A
586 603Right-handed alpha
Helix 17
AB8
A
618 622Right-handed 310
Helix 18
AB9
A
634 651Right-handed alpha
Helix 19
AC1
A
666 680Right-handed alpha
Helix 20
AC2
A
683 701Right-handed alpha
Helix 21
AC3
A
716 721Right-handed alpha
Helix 22
AC4
A
725 741Right-handed alpha
Helix 23
AC5
A
741 755Right-handed alpha
Helix 24
AC6
A
762 767Right-handed alpha
Helix 25
AC7
A
770 774Right-handed 310
Helix 26
AC8
A
882 887Right-handed 310
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There are 13 sheets in PDB entry 5JOV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 28first strand
Strand 2
A
32 36anti-parallel
Strand 3
A
47 54anti-parallel
Strand 4
A
57 63anti-parallel
Strand 5
A
374 380anti-parallel
Strand 6
A
196 200anti-parallel
Strand 7
A
185 192anti-parallel
Strand 8
A
158 163anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
93 97anti-parallel
Strand 3
A
101 106anti-parallel
Strand 4
A
112 116anti-parallel
Strand 5
A
121 124anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 138first strand
Strand 2
A
141 150anti-parallel
Strand 3
A
364 371anti-parallel
Strand 4
A
206 208anti-parallel
Strand 5
A
176 178anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
348 353anti-parallel
Strand 3
A
253 254anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
215 216first strand
Strand 2
A
348 353anti-parallel
Strand 3
A
286 294anti-parallel
Strand 4
A
319 327anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 224first strand
Strand 2
A
273 282anti-parallel
Strand 3
A
233 238anti-parallel
Strand 4
A
245 249anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 224first strand
Strand 2
A
273 282anti-parallel
Strand 3
A
333 340anti-parallel
Strand 4
A
296 302anti-parallel
Strand 5
A
305 313anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
656 657first strand
Strand 2
A
624 627parallel
Strand 3
A
610 612parallel
Strand 4
A
549 552parallel
Strand 5
A
476 481parallel
Strand 6
A
437 440parallel
Strand 7
A
408 410parallel
Strand 8
A
706 708parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 486first strand
Strand 2
A
520 522anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
760 761first strand
Strand 2
A
780 782anti-parallel
Strand 3
A
786 788anti-parallel
Strand 4
A
835 838anti-parallel
Strand 5
A
809 811anti-parallel
Strand 6
A
817 818anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
798 803first strand
Strand 2
A
822 827anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
842 845first strand
Strand 2
A
859 865anti-parallel
Strand 3
A
919 926parallel
Strand 4
A
941 945anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
870 876first strand
Strand 2
A
890 897anti-parallel
Strand 3
A
902 905anti-parallel
Strand 4
A
950 953anti-parallel
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