Analysis of interatomic Contacts of Structural Units in PDB entry:
5JOY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JOY entry

There are 2 chains in PDB entry 5JOY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 20	LYS 521
B	GLN 21	PRO 522

There are 13 helices in PDB entry 5JOY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	77	81	Right-handed 310
Helix 2	AA2	A	155	159	Right-handed 310
Helix 3	AA3	A	240	244	Right-handed 310
Helix 4	AA4	A	345	347	Right-handed 310
Helix 5	AA5	A	421	423	Right-handed 310
Helix 6	AA6	A	481	483	Right-handed 310
Helix 7	AA7	A	484	489	Right-handed alpha
Helix 8	AA8	B	77	81	Right-handed 310
Helix 9	AA9	B	155	159	Right-handed 310
Helix 10	AB1	B	240	244	Right-handed 310
Helix 11	AB2	B	345	347	Right-handed 310
Helix 12	AB3	B	481	483	Right-handed 310
Helix 13	AB4	B	484	489	Right-handed alpha

There are 22 sheets in PDB entry 5JOY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	24	first strand
Strand 2	A	309	313	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	43	47	anti-parallel
Strand 3	A	56	62	anti-parallel
Strand 4	A	69	75	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	340	341	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	100	first strand
Strand 2	A	103	110	anti-parallel
Strand 3	A	115	121	anti-parallel
Strand 4	A	132	133	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	146	first strand
Strand 2	A	149	154	anti-parallel
Strand 3	A	160	165	anti-parallel
Strand 4	A	177	180	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	196	first strand
Strand 2	A	199	206	anti-parallel
Strand 3	A	214	220	anti-parallel
Strand 4	A	228	229	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	189	196	first strand
Strand 2	A	199	206	anti-parallel
Strand 3	A	214	220	anti-parallel
Strand 4	A	236	237	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	258	first strand
Strand 2	A	264	272	anti-parallel
Strand 3	A	284	291	anti-parallel
Strand 4	A	299	300	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	328	first strand
Strand 2	A	515	520	anti-parallel
Strand 3	A	384	393	anti-parallel
Strand 4	A	510	513	anti-parallel
Strand 5	A	357	360	anti-parallel
Strand 6	A	349	351	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	328	first strand
Strand 2	A	515	520	anti-parallel
Strand 3	A	384	393	anti-parallel
Strand 4	A	451	457	anti-parallel
Strand 5	A	461	468	anti-parallel
Strand 6	A	471	479	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	378	first strand
Strand 2	A	495	501	anti-parallel
Strand 3	A	400	408	anti-parallel
Strand 4	A	411	419	anti-parallel
Strand 5	A	425	433	anti-parallel
Strand 6	A	436	444	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	24	first strand
Strand 2	B	309	310	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	40	first strand
Strand 2	B	43	47	anti-parallel
Strand 3	B	56	62	anti-parallel
Strand 4	B	69	75	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	340	341	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	100	first strand
Strand 2	B	103	110	anti-parallel
Strand 3	B	115	121	anti-parallel
Strand 4	B	132	133	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	146	first strand
Strand 2	B	149	154	anti-parallel
Strand 3	B	160	165	anti-parallel
Strand 4	B	177	180	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	196	first strand
Strand 2	B	199	206	anti-parallel
Strand 3	B	214	220	anti-parallel
Strand 4	B	228	229	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	189	196	first strand
Strand 2	B	199	206	anti-parallel
Strand 3	B	214	220	anti-parallel
Strand 4	B	236	237	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	258	first strand
Strand 2	B	264	272	anti-parallel
Strand 3	B	284	291	anti-parallel
Strand 4	B	299	300	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	328	first strand
Strand 2	B	515	520	anti-parallel
Strand 3	B	384	393	anti-parallel
Strand 4	B	510	513	anti-parallel
Strand 5	B	357	360	anti-parallel
Strand 6	B	349	351	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	328	first strand
Strand 2	B	515	520	anti-parallel
Strand 3	B	384	393	anti-parallel
Strand 4	B	451	457	anti-parallel
Strand 5	B	461	468	anti-parallel
Strand 6	B	471	479	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	378	first strand
Strand 2	B	495	501	anti-parallel
Strand 3	B	400	408	anti-parallel
Strand 4	B	411	419	anti-parallel
Strand 5	B	425	433	anti-parallel
Strand 6	B	436	445	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JOY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JOY