Analysis of interatomic Contacts of Structural Units in PDB entry:
5JOZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JOZ entry

There are 2 chains in PDB entry 5JOZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 25	GLU 531
B	LYS 25	LEU 528

There are 7 helices in PDB entry 5JOZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	352	354	Right-handed 310
Helix 2	AA2	A	488	490	Right-handed 310
Helix 3	AA3	A	491	496	Right-handed alpha
Helix 4	AA4	B	280	284	Right-handed 310
Helix 5	AA5	B	352	354	Right-handed 310
Helix 6	AA6	B	488	490	Right-handed 310
Helix 7	AA7	B	491	496	Right-handed alpha

There are 23 sheets in PDB entry 5JOZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	28	first strand
Strand 2	A	316	318	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	44	first strand
Strand 2	A	47	51	anti-parallel
Strand 3	A	60	66	anti-parallel
Strand 4	A	73	79	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	57	58	first strand
Strand 2	A	347	348	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	108	116	anti-parallel
Strand 3	A	101	105	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	97	first strand
Strand 2	A	108	116	anti-parallel
Strand 3	A	124	129	anti-parallel
Strand 4	A	140	141	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	154	first strand
Strand 2	A	157	163	anti-parallel
Strand 3	A	168	174	anti-parallel
Strand 4	A	181	190	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	198	205	first strand
Strand 2	A	208	215	anti-parallel
Strand 3	A	223	229	anti-parallel
Strand 4	A	237	238	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	265	first strand
Strand 2	A	271	278	anti-parallel
Strand 3	A	291	299	anti-parallel
Strand 4	A	305	306	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	518	527	anti-parallel
Strand 3	A	365	367	anti-parallel
Strand 4	A	356	357	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	518	527	anti-parallel
Strand 3	A	392	399	anti-parallel
Strand 4	A	458	464	anti-parallel
Strand 5	A	468	475	anti-parallel
Strand 6	A	478	486	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	386	first strand
Strand 2	A	502	508	anti-parallel
Strand 3	A	408	416	anti-parallel
Strand 4	A	419	428	anti-parallel
Strand 5	A	431	440	anti-parallel
Strand 6	A	443	451	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	28	first strand
Strand 2	B	316	318	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	44	first strand
Strand 2	B	47	51	anti-parallel
Strand 3	B	60	66	anti-parallel
Strand 4	B	73	79	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	57	58	first strand
Strand 2	B	347	348	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	108	116	anti-parallel
Strand 3	B	101	105	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	B	108	116	anti-parallel
Strand 3	B	124	129	anti-parallel
Strand 4	B	140	141	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	154	first strand
Strand 2	B	157	163	anti-parallel
Strand 3	B	168	174	anti-parallel
Strand 4	B	183	190	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	205	first strand
Strand 2	B	208	215	anti-parallel
Strand 3	B	223	229	anti-parallel
Strand 4	B	237	238	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	198	205	first strand
Strand 2	B	208	215	anti-parallel
Strand 3	B	223	229	anti-parallel
Strand 4	B	245	246	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	265	first strand
Strand 2	B	271	278	anti-parallel
Strand 3	B	291	299	anti-parallel
Strand 4	B	305	306	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	334	first strand
Strand 2	B	518	527	anti-parallel
Strand 3	B	365	367	anti-parallel
Strand 4	B	356	357	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	334	first strand
Strand 2	B	518	527	anti-parallel
Strand 3	B	392	399	anti-parallel
Strand 4	B	458	464	anti-parallel
Strand 5	B	468	475	anti-parallel
Strand 6	B	478	486	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	386	first strand
Strand 2	B	502	508	anti-parallel
Strand 3	B	408	416	anti-parallel
Strand 4	B	419	428	anti-parallel
Strand 5	B	431	440	anti-parallel
Strand 6	B	443	451	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JOZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JOZ