Analysis of interatomic Contacts of Structural Units in PDB entry:
5JP0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JP0 entry

There are 2 chains in PDB entry 5JP0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 26	ASN 782
B	SER 26	ASP 576

There are 64 helices in PDB entry 5JP0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	32	46	Right-handed alpha
Helix 2	AA2	A	47	55	Right-handed alpha
Helix 3	AA3	A	61	64	Right-handed 310
Helix 4	AA4	A	65	73	Right-handed alpha
Helix 5	AA5	A	77	85	Right-handed alpha
Helix 6	AA6	A	96	100	Right-handed 310
Helix 7	AA7	A	103	122	Right-handed alpha
Helix 8	AA8	A	147	154	Right-handed alpha
Helix 9	AA9	A	156	173	Right-handed alpha
Helix 10	AB1	A	194	198	Right-handed 310
Helix 11	AB2	A	202	219	Right-handed alpha
Helix 12	AB3	A	255	262	Right-handed alpha
Helix 13	AB4	A	264	273	Right-handed alpha
Helix 14	AB5	A	293	299	Right-handed alpha
Helix 15	AB6	A	316	324	Right-handed alpha
Helix 16	AB7	A	330	342	Right-handed alpha
Helix 17	AB8	A	352	364	Right-handed alpha
Helix 18	AB9	A	368	386	Right-handed alpha
Helix 19	AC1	A	404	419	Right-handed alpha
Helix 20	AC2	A	426	428	Right-handed 310
Helix 21	AC3	A	446	452	Right-handed alpha
Helix 22	AC4	A	462	467	Right-handed alpha
Helix 23	AC5	A	472	482	Right-handed alpha
Helix 24	AC6	A	510	517	Right-handed alpha
Helix 25	AC7	A	518	520	Right-handed 310
Helix 26	AC8	A	534	538	Right-handed 310
Helix 27	AC9	A	545	557	Right-handed alpha
Helix 28	AD1	A	577	581	Right-handed 310
Helix 29	AD2	A	590	592	Right-handed 310
Helix 30	AD3	A	593	603	Right-handed alpha
Helix 31	AD4	A	629	634	Right-handed 310
Helix 32	AD5	A	739	742	Right-handed 310
Helix 33	AD6	B	32	46	Right-handed alpha
Helix 34	AD7	B	47	55	Right-handed alpha
Helix 35	AD8	B	61	64	Right-handed 310
Helix 36	AD9	B	65	73	Right-handed alpha
Helix 37	AE1	B	77	85	Right-handed alpha
Helix 38	AE2	B	96	100	Right-handed 310
Helix 39	AE3	B	103	122	Right-handed alpha
Helix 40	AE4	B	147	154	Right-handed alpha
Helix 41	AE5	B	156	173	Right-handed alpha
Helix 42	AE6	B	194	198	Right-handed 310
Helix 43	AE7	B	202	219	Right-handed alpha
Helix 44	AE8	B	255	262	Right-handed alpha
Helix 45	AE9	B	264	273	Right-handed alpha
Helix 46	AF1	B	293	299	Right-handed alpha
Helix 47	AF2	B	316	324	Right-handed alpha
Helix 48	AF3	B	330	342	Right-handed alpha
Helix 49	AF4	B	352	364	Right-handed alpha
Helix 50	AF5	B	368	386	Right-handed alpha
Helix 51	AF6	B	404	419	Right-handed alpha
Helix 52	AF7	B	426	428	Right-handed 310
Helix 53	AF8	B	446	452	Right-handed alpha
Helix 54	AF9	B	462	467	Right-handed alpha
Helix 55	AG1	B	472	482	Right-handed alpha
Helix 56	AG2	B	510	517	Right-handed alpha
Helix 57	AG3	B	518	520	Right-handed 310
Helix 58	AG4	B	534	538	Right-handed 310
Helix 59	AG5	B	545	557	Right-handed alpha
Helix 60	AG6	B	577	581	Right-handed 310
Helix 61	AG7	B	590	592	Right-handed 310
Helix 62	AG8	B	593	603	Right-handed alpha
Helix 63	AG9	B	629	634	Right-handed 310
Helix 64	AH1	B	739	742	Right-handed 310

There are 16 sheets in PDB entry 5JP0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	178	179	first strand
Strand 2	A	127	130	parallel
Strand 3	A	92	94	parallel
Strand 4	A	56	59	parallel
Strand 5	A	346	347	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	237	first strand
Strand 2	A	277	280	parallel
Strand 3	A	310	312	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	285	first strand
Strand 2	A	288	289	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	424	first strand
Strand 2	A	583	586	anti-parallel
Strand 3	A	562	567	parallel
Strand 4	A	522	528	parallel
Strand 5	A	437	440	parallel
Strand 6	A	486	488	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	616	617	first strand
Strand 2	A	649	651	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	662	669	first strand
Strand 2	A	679	688	anti-parallel
Strand 3	A	729	737	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	673	674	first strand
Strand 2	A	764	770	parallel
Strand 3	A	755	761	anti-parallel
Strand 4	A	694	704	anti-parallel
Strand 5	A	715	724	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	743	744	first strand
Strand 2	A	750	752	anti-parallel
Strand 3	A	774	775	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	179	first strand
Strand 2	B	127	130	parallel
Strand 3	B	92	94	parallel
Strand 4	B	56	59	parallel
Strand 5	B	346	347	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	237	first strand
Strand 2	B	277	280	parallel
Strand 3	B	310	312	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	285	first strand
Strand 2	B	288	289	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	424	first strand
Strand 2	B	583	588	anti-parallel
Strand 3	B	562	567	parallel
Strand 4	B	522	528	parallel
Strand 5	B	437	440	parallel
Strand 6	B	486	488	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	616	617	first strand
Strand 2	B	649	651	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	662	669	first strand
Strand 2	B	679	688	anti-parallel
Strand 3	B	729	737	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	673	674	first strand
Strand 2	B	764	770	parallel
Strand 3	B	755	761	anti-parallel
Strand 4	B	694	704	anti-parallel
Strand 5	B	715	724	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	743	744	first strand
Strand 2	B	750	752	anti-parallel
Strand 3	B	774	775	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JP0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JP0