Analysis of interatomic Contacts of Structural Units in PDB entry:
5JP1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JP1 entry

There are 2 chains in PDB entry 5JP1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 317ALA 515
B
 VAL 19GLY 95
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5JP1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
341 356Right-handed alpha
Helix 2
AA2
A
360 362Right-handed 310
Helix 3
AA3
A
368 375Right-handed alpha
Helix 4
AA4
A
379 392Right-handed alpha
Helix 5
AA5
A
435 449Right-handed alpha
Helix 6
AA6
A
452 456Right-handed 310
Helix 7
AA7
A
469 487Right-handed alpha
Helix 8
AA8
A
504 514Right-handed alpha
Helix 9
AA9
B
43 55Right-handed alpha
Helix 10
AB1
B
57 59Right-handed 310
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There are 3 sheets in PDB entry 5JP1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
B
94 95anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 366first strand
Strand 2
A
398 405parallel
Strand 3
A
409 416anti-parallel
Strand 4
A
424 428anti-parallel
Strand 5
A
457 458parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 38first strand
Strand 2
B
20 26anti-parallel
Strand 3
B
86 91parallel
Strand 4
B
61 65anti-parallel
Strand 5
B
68 69anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il