Analysis of interatomic Contacts of Structural Units in PDB entry:
5JP2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JP2 entry

There are 4 chains in PDB entry 5JP2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 PHE 620GLY 637
A
 LEU 877SER 1151
F
 PHE 620GLY 637
B
 LEU 877LEU 1152
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 5JP2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
920 928Right-handed alpha
Helix 2
AA2
A
971 986Right-handed alpha
Helix 3
AA3
A
1005 1009Right-handed 310
Helix 4
AA4
A
1084 1088Right-handed alpha
Helix 5
AA5
B
920 928Right-handed alpha
Helix 6
AA6
B
971 986Right-handed alpha
Helix 7
AA7
B
1005 1009Right-handed 310
Helix 8
AA8
B
1084 1088Right-handed alpha
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There are 6 sheets in PDB entry 5JP2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
946 949first strand
Strand 2
A
991 1003anti-parallel
Strand 3
A
905 918anti-parallel
Strand 4
A
883 897anti-parallel
Strand 5
A
1132 1149parallel
Strand 6
A
1108 1116anti-parallel
Strand 7
A
1043 1050anti-parallel
Strand 8
A
1072 1076anti-parallel
Strand 9
A
1065 1067anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 956first strand
Strand 2
A
965 970anti-parallel
Strand 3
A
935 939anti-parallel
Strand 4
A
1124 1127anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1011 1020first strand
Strand 2
A
1023 1032anti-parallel
Strand 3
A
1089 1097anti-parallel
Strand 4
A
1056 1061anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
946 949first strand
Strand 2
B
991 1003anti-parallel
Strand 3
B
905 918anti-parallel
Strand 4
B
883 897anti-parallel
Strand 5
B
1132 1149parallel
Strand 6
B
1108 1116anti-parallel
Strand 7
B
1043 1050anti-parallel
Strand 8
B
1072 1076anti-parallel
Strand 9
B
1065 1067anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
954 956first strand
Strand 2
B
965 970anti-parallel
Strand 3
B
935 939anti-parallel
Strand 4
B
1124 1128anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1011 1020first strand
Strand 2
B
1023 1032anti-parallel
Strand 3
B
1089 1097anti-parallel
Strand 4
B
1056 1061anti-parallel
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