Analysis of interatomic Contacts of Structural Units in PDB entry:
5JP3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JP3 entry

There are 8 chains in PDB entry 5JP3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 311	ALA 515
C	PRO 320	ALA 515
E	GLN 323	ALA 515
B	MET 1	GLY 75
D	MET 1	GLY 75
H	MET 1	GLY 75
G	PRO 320	ALA 515
F	MET 1	GLY 75

There are 42 helices in PDB entry 5JP3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	321	325	Right-handed 310
Helix 2	AA2	A	341	356	Right-handed alpha
Helix 3	AA3	A	360	362	Right-handed 310
Helix 4	AA4	A	368	375	Right-handed alpha
Helix 5	AA5	A	379	391	Right-handed alpha
Helix 6	AA6	A	435	449	Right-handed alpha
Helix 7	AA7	A	452	456	Right-handed 310
Helix 8	AA8	A	469	488	Right-handed alpha
Helix 9	AA9	A	489	492	Right-handed 310
Helix 10	AB1	A	504	515	Right-handed alpha
Helix 11	AB2	C	321	325	Right-handed 310
Helix 12	AB3	C	341	356	Right-handed alpha
Helix 13	AB4	C	360	362	Right-handed 310
Helix 14	AB5	C	368	375	Right-handed alpha
Helix 15	AB6	C	379	392	Right-handed alpha
Helix 16	AB7	C	435	449	Right-handed alpha
Helix 17	AB8	C	452	456	Right-handed 310
Helix 18	AB9	C	469	488	Right-handed alpha
Helix 19	AC1	C	489	492	Right-handed 310
Helix 20	AC2	C	504	514	Right-handed alpha
Helix 21	AC3	E	341	355	Right-handed alpha
Helix 22	AC4	E	360	362	Right-handed 310
Helix 23	AC5	E	368	375	Right-handed alpha
Helix 24	AC6	E	379	391	Right-handed alpha
Helix 25	AC7	E	435	449	Right-handed alpha
Helix 26	AC8	E	452	456	Right-handed 310
Helix 27	AC9	E	469	487	Right-handed alpha
Helix 28	AD1	E	488	492	Right-handed 310
Helix 29	AD2	E	504	514	Right-handed alpha
Helix 30	AD3	B	22	35	Right-handed alpha
Helix 31	AD4	D	22	35	Right-handed alpha
Helix 32	AD5	H	22	35	Right-handed alpha
Helix 33	AD6	H	37	39	Right-handed 310
Helix 34	AD7	G	340	356	Right-handed alpha
Helix 35	AD8	G	360	362	Right-handed 310
Helix 36	AD9	G	368	375	Right-handed alpha
Helix 37	AE1	G	379	391	Right-handed alpha
Helix 38	AE2	G	435	449	Right-handed alpha
Helix 39	AE3	G	452	456	Right-handed 310
Helix 40	AE4	G	469	488	Right-handed alpha
Helix 41	AE5	G	504	514	Right-handed alpha
Helix 42	AE6	F	22	35	Right-handed alpha

There are 11 sheets in PDB entry 5JP3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	339	340	first strand
Strand 2	B	74	75	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	364	366	first strand
Strand 2	A	398	405	parallel
Strand 3	A	409	416	anti-parallel
Strand 4	A	424	428	anti-parallel
Strand 5	A	457	459	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	339	340	first strand
Strand 2	D	74	75	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	364	366	first strand
Strand 2	C	398	405	parallel
Strand 3	C	409	416	anti-parallel
Strand 4	C	424	428	anti-parallel
Strand 5	C	457	458	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	339	340	first strand
Strand 2	F	74	75	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	364	366	first strand
Strand 2	E	398	405	parallel
Strand 3	E	409	416	anti-parallel
Strand 4	E	424	428	anti-parallel
Strand 5	E	457	459	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	16	first strand
Strand 2	B	2	7	anti-parallel
Strand 3	B	66	71	parallel
Strand 4	B	41	45	anti-parallel
Strand 5	B	48	49	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	16	first strand
Strand 2	D	2	7	anti-parallel
Strand 3	D	66	71	parallel
Strand 4	D	41	45	anti-parallel
Strand 5	D	48	49	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	14	first strand
Strand 2	H	4	7	anti-parallel
Strand 3	H	66	71	parallel
Strand 4	H	41	45	anti-parallel
Strand 5	H	48	49	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	364	366	first strand
Strand 2	G	398	405	parallel
Strand 3	G	409	416	anti-parallel
Strand 4	G	424	428	anti-parallel
Strand 5	G	457	459	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	16	first strand
Strand 2	F	2	7	anti-parallel
Strand 3	F	66	71	parallel
Strand 4	F	41	45	anti-parallel
Strand 5	F	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JP3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JP3