Analysis of interatomic Contacts of Structural Units in PDB entry:
5JP6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JP6 entry

There are 2 chains in PDB entry 5JP6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 23PHE 278
A
 TYR 280LYS 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5JP6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 40Right-handed alpha
Helix 2
AA2
A
42 48Right-handed alpha
Helix 3
AA3
A
52 67Right-handed alpha
Helix 4
AA4
A
70 84Right-handed alpha
Helix 5
AA5
A
86 91Right-handed alpha
Helix 6
AA6
A
93 99Right-handed alpha
Helix 7
AA7
A
102 107Right-handed alpha
Helix 8
AA8
A
109 127Right-handed alpha
Helix 9
AA9
A
182 194Right-handed alpha
Helix 10
AB1
A
203 210Right-handed alpha
Helix 11
AB2
A
210 220Right-handed alpha
Helix 12
AB3
A
250 270Right-handed alpha
Helix 13
AB4
A
284 294Right-handed alpha
Helix 14
AB5
A
312 328Right-handed alpha
Helix 15
AB6
A
338 355Right-handed alpha
Helix 16
AB7
A
368 372Right-handed 310
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There are 3 sheets in PDB entry 5JP6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
A
361 364parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
297 299parallel
Strand 3
A
275 277parallel
Strand 4
A
223 227parallel
Strand 5
A
199 202parallel
Strand 6
A
170 176parallel
Strand 7
A
330 335parallel
Strand 8
A
303 304parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
297 299parallel
Strand 3
A
275 277parallel
Strand 4
A
223 227parallel
Strand 5
A
199 202parallel
Strand 6
A
170 176parallel
Strand 7
A
358 359parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il