Analysis of interatomic Contacts of Structural Units in PDB entry:
5JPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JPE entry

There are 2 chains in PDB entry 5JPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 169GLN 478
B
 ASP 172GLN 478
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5JPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
172 187Right-handed alpha
Helix 2
AA2
A
196 214Right-handed alpha
Helix 3
AA3
A
233 245Right-handed alpha
Helix 4
AA4
A
264 279Right-handed alpha
Helix 5
AA5
A
292 297Right-handed alpha
Helix 6
AA6
A
300 309Right-handed alpha
Helix 7
AA7
A
310 322Right-handed alpha
Helix 8
AA8
A
347 353Right-handed alpha
Helix 9
AA9
A
364 372Right-handed alpha
Helix 10
AB1
A
393 405Right-handed alpha
Helix 11
AB2
A
436 440Right-handed 310
Helix 12
AB3
A
465 477Right-handed alpha
Helix 13
AB4
B
173 186Right-handed alpha
Helix 14
AB5
B
196 214Right-handed alpha
Helix 15
AB6
B
233 245Right-handed alpha
Helix 16
AB7
B
264 279Right-handed alpha
Helix 17
AB8
B
292 299Right-handed alpha
Helix 18
AB9
B
300 309Right-handed alpha
Helix 19
AC1
B
310 322Right-handed alpha
Helix 20
AC2
B
347 353Right-handed alpha
Helix 21
AC3
B
364 372Right-handed alpha
Helix 22
AC4
B
393 405Right-handed alpha
Helix 23
AC5
B
436 440Right-handed 310
Helix 24
AC6
B
465 477Right-handed alpha
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There are 6 sheets in PDB entry 5JPE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 220first strand
Strand 2
A
327 330parallel
Strand 3
A
334 337anti-parallel
Strand 4
A
408 411parallel
Strand 5
A
428 431parallel
Strand 6
A
420 423anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
283 285first strand
Strand 2
A
252 254parallel
Strand 3
A
224 227parallel
Strand 4
A
445 450anti-parallel
Strand 5
A
456 461anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 374first strand
Strand 2
A
390 392parallel
Strand 3
A
381 383anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 220first strand
Strand 2
B
327 330parallel
Strand 3
B
334 337anti-parallel
Strand 4
B
408 411parallel
Strand 5
B
428 431parallel
Strand 6
B
420 423anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
283 285first strand
Strand 2
B
252 254parallel
Strand 3
B
224 227parallel
Strand 4
B
445 450anti-parallel
Strand 5
B
456 461anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
373 374first strand
Strand 2
B
390 392parallel
Strand 3
B
381 383anti-parallel
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