Analysis of interatomic Contacts of Structural Units in PDB entry:
5JPF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JPF entry

There are 3 chains in PDB entry 5JPF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 172LEU 464
M
LEU 2LEU 2
M
ARG 4ARG 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5JPF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
172 187Right-handed alpha
Helix 2
AA2
A
196 213Right-handed alpha
Helix 3
AA3
A
233 245Right-handed alpha
Helix 4
AA4
A
264 279Right-handed alpha
Helix 5
AA5
A
292 300Right-handed alpha
Helix 6
AA6
A
300 309Right-handed alpha
Helix 7
AA7
A
310 322Right-handed alpha
Helix 8
AA8
A
348 353Right-handed alpha
Helix 9
AA9
A
364 372Right-handed alpha
Helix 10
AB1
A
393 405Right-handed alpha
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There are 3 sheets in PDB entry 5JPF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
217 220first strand
Strand 2
A
327 330parallel
Strand 3
A
334 337anti-parallel
Strand 4
A
408 411parallel
Strand 5
A
428 431parallel
Strand 6
A
420 423anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
283 285first strand
Strand 2
A
252 254parallel
Strand 3
A
224 227parallel
Strand 4
A
445 450anti-parallel
Strand 5
A
456 461anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
373 374first strand
Strand 2
A
390 392parallel
Strand 3
A
381 383anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il