Analysis of interatomic Contacts of Structural Units in PDB entry:
5JPI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JPI entry

There are 3 chains in PDB entry 5JPI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0TYR 495
B
 GLU 4TYR 495
C
 TYR 1GLN 252
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are106 helices in PDB entry 5JPI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
0 5Right-handed alpha
Helix 2
AA2
A
9 11Right-handed 310
Helix 3
AA3
A
12 25Right-handed alpha
Helix 4
AA4
A
27 38Right-handed alpha
Helix 5
AA5
A
55 68Right-handed alpha
Helix 6
AA6
A
83 93Right-handed alpha
Helix 7
AA7
A
105 118Right-handed alpha
Helix 8
AA8
A
139 158Right-handed alpha
Helix 9
AA9
A
162 166Right-handed 310
Helix 10
AB1
A
177 194Right-handed alpha
Helix 11
AB2
A
196 203Right-handed alpha
Helix 12
AB3
A
212 225Right-handed alpha
Helix 13
AB4
A
238 243Right-handed alpha
Helix 14
AB5
A
244 262Right-handed alpha
Helix 15
AB6
A
277 290Right-handed alpha
Helix 16
AB7
A
300 310Right-handed alpha
Helix 17
AB8
A
316 321Right-handed alpha
Helix 18
AB9
A
338 345Right-handed alpha
Helix 19
AC1
A
357 361Right-handed 310
Helix 20
AC2
A
362 368Right-handed alpha
Helix 21
AC3
A
398 400Right-handed 310
Helix 22
AC4
A
401 406Right-handed alpha
Helix 23
AC5
A
411 432Right-handed alpha
Helix 24
AC6
A
433 436Right-handed 310
Helix 25
AC7
A
450 460Right-handed alpha
Helix 26
AC8
A
461 466Right-handed 310
Helix 27
AC9
A
473 480Right-handed alpha
Helix 28
AD1
B
9 11Right-handed 310
Helix 29
AD2
B
12 24Right-handed alpha
Helix 30
AD3
B
27 38Right-handed alpha
Helix 31
AD4
B
55 68Right-handed alpha
Helix 32
AD5
B
83 93Right-handed alpha
Helix 33
AD6
B
105 118Right-handed alpha
Helix 34
AD7
B
139 159Right-handed alpha
Helix 35
AD8
B
162 166Right-handed 310
Helix 36
AD9
B
177 194Right-handed alpha
Helix 37
AE1
B
196 202Right-handed alpha
Helix 38
AE2
B
203 205Right-handed 310
Helix 39
AE3
B
212 225Right-handed alpha
Helix 40
AE4
B
238 243Right-handed alpha
Helix 41
AE5
B
244 262Right-handed alpha
Helix 42
AE6
B
277 290Right-handed alpha
Helix 43
AE7
B
300 310Right-handed alpha
Helix 44
AE8
B
316 321Right-handed alpha
Helix 45
AE9
B
338 344Right-handed alpha
Helix 46
AF1
B
357 361Right-handed 310
Helix 47
AF2
B
362 368Right-handed alpha
Helix 48
AF3
B
398 400Right-handed 310
Helix 49
AF4
B
401 406Right-handed alpha
Helix 50
AF5
B
411 432Right-handed alpha
Helix 51
AF6
B
433 436Right-handed 310
Helix 52
AF7
B
450 460Right-handed alpha
Helix 53
AF8
B
461 466Right-handed 310
Helix 54
AF9
B
473 481Right-handed alpha
Helix 55
AG1
C
9 11Right-handed 310
Helix 56
AG2
C
12 25Right-handed alpha
Helix 57
AG3
C
27 38Right-handed alpha
Helix 58
AG4
C
55 68Right-handed alpha
Helix 59
AG5
C
83 93Right-handed alpha
Helix 60
AG6
C
105 118Right-handed alpha
Helix 61
AG7
C
139 159Right-handed alpha
Helix 62
AG8
C
162 167Right-handed 310
Helix 63
AG9
C
177 194Right-handed alpha
Helix 64
AH1
C
196 203Right-handed alpha
Helix 65
AH2
C
212 225Right-handed alpha
Helix 66
AH3
C
238 243Right-handed alpha
Helix 67
AH4
C
244 262Right-handed alpha
Helix 68
AH5
C
277 290Right-handed alpha
Helix 69
AH6
C
300 310Right-handed alpha
Helix 70
AH7
C
316 321Right-handed alpha
Helix 71
AH8
C
338 345Right-handed alpha
Helix 72
AH9
C
357 361Right-handed 310
Helix 73
AI1
C
362 368Right-handed alpha
Helix 74
AI2
C
398 400Right-handed 310
Helix 75
AI3
C
401 406Right-handed alpha
Helix 76
AI4
C
411 432Right-handed alpha
Helix 77
AI5
C
433 436Right-handed 310
Helix 78
AI6
C
450 462Right-handed alpha
Helix 79
AI7
C
463 466Right-handed 310
Helix 80
AI8
C
473 480Right-handed alpha
Helix 81
AI9
D
9 11Right-handed 310
Helix 82
AJ1
D
12 25Right-handed alpha
Helix 83
AJ2
D
27 38Right-handed alpha
Helix 84
AJ3
D
55 68Right-handed alpha
Helix 85
AJ4
D
83 93Right-handed alpha
Helix 86
AJ5
D
105 117Right-handed alpha
Helix 87
AJ6
D
139 158Right-handed alpha
Helix 88
AJ7
D
162 166Right-handed 310
Helix 89
AJ8
D
177 194Right-handed alpha
Helix 90
AJ9
D
196 203Right-handed alpha
Helix 91
AK1
D
212 225Right-handed alpha
Helix 92
AK2
D
238 243Right-handed alpha
Helix 93
AK3
D
244 262Right-handed alpha
Helix 94
AK4
D
277 290Right-handed alpha
Helix 95
AK5
D
300 310Right-handed alpha
Helix 96
AK6
D
316 321Right-handed alpha
Helix 97
AK7
D
338 345Right-handed alpha
Helix 98
AK8
D
357 361Right-handed 310
Helix 99
AK9
D
362 368Right-handed alpha
Helix 100
AL1
D
398 400Right-handed 310
Helix 101
AL2
D
401 406Right-handed alpha
Helix 102
AL3
D
411 432Right-handed alpha
Helix 103
AL4
D
433 436Right-handed 310
Helix 104
AL5
D
450 462Right-handed alpha
Helix 105
AL6
D
463 466Right-handed 310
Helix 106
AL7
D
473 480Right-handed alpha
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There are 11 sheets in PDB entry 5JPI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 99first strand
Strand 2
A
71 75parallel
Strand 3
A
47 51parallel
Strand 4
A
133 136parallel
Strand 5
A
207 210parallel
Strand 6
A
232 234parallel
Strand 7
A
446 447parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 120first strand
Strand 2
A
128 129anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
293 297parallel
Strand 3
A
270 274parallel
Strand 4
A
326 329parallel
Strand 5
A
349 353parallel
Strand 6
A
392 396parallel
Strand 7
A
381 385anti-parallel
Strand 8
A
373 378anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 98first strand
Strand 2
B
71 75parallel
Strand 3
B
47 51parallel
Strand 4
B
133 136parallel
Strand 5
B
207 210parallel
Strand 6
B
232 234parallel
Strand 7
B
446 447parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 314first strand
Strand 2
B
293 297parallel
Strand 3
B
270 274parallel
Strand 4
B
326 329parallel
Strand 5
B
349 353parallel
Strand 6
B
392 396parallel
Strand 7
B
381 385anti-parallel
Strand 8
B
373 378anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 99first strand
Strand 2
C
71 75parallel
Strand 3
C
47 51parallel
Strand 4
C
133 136parallel
Strand 5
C
207 210parallel
Strand 6
C
232 234parallel
Strand 7
C
446 447parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
119 121first strand
Strand 2
C
127 129anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
313 314first strand
Strand 2
C
293 297parallel
Strand 3
C
270 274parallel
Strand 4
C
326 329parallel
Strand 5
C
349 353parallel
Strand 6
C
392 396parallel
Strand 7
C
381 385anti-parallel
Strand 8
C
373 378anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
97 99first strand
Strand 2
D
71 75parallel
Strand 3
D
47 51parallel
Strand 4
D
133 136parallel
Strand 5
D
207 210parallel
Strand 6
D
232 234parallel
Strand 7
D
446 447parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
119 120first strand
Strand 2
D
128 129anti-parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
313 314first strand
Strand 2
D
293 297parallel
Strand 3
D
270 274parallel
Strand 4
D
326 329parallel
Strand 5
D
349 353parallel
Strand 6
D
392 396parallel
Strand 7
D
381 385anti-parallel
Strand 8
D
373 378anti-parallel
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