Analysis of interatomic Contacts of Structural Units in PDB entry:
5JPN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5JPN entry

There are 2 chains in PDB entry 5JPN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 20	PRO 670
B	PRO 697	ASN 1367

There are 34 helices in PDB entry 5JPN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	90	97	Right-handed alpha
Helix 2	AA2	A	115	120	Right-handed alpha
Helix 3	AA3	A	315	326	Right-handed alpha
Helix 4	AA4	A	606	611	Right-handed alpha
Helix 5	AA5	A	620	629	Right-handed alpha
Helix 6	AA6	A	630	632	Right-handed 310
Helix 7	AA7	A	642	651	Right-handed alpha
Helix 8	AA8	B	698	708	Right-handed alpha
Helix 9	AA9	B	715	720	Right-handed alpha
Helix 10	AB1	B	725	741	Right-handed alpha
Helix 11	AB2	B	877	882	Right-handed 310
Helix 12	AB3	B	952	955	Right-handed 310
Helix 13	AB4	B	983	990	Right-handed alpha
Helix 14	AB5	B	998	1004	Right-handed alpha
Helix 15	AB6	B	1011	1017	Right-handed 310
Helix 16	AB7	B	1018	1032	Right-handed alpha
Helix 17	AB8	B	1039	1058	Right-handed alpha
Helix 18	AB9	B	1075	1089	Right-handed alpha
Helix 19	AC1	B	1090	1092	Right-handed 310
Helix 20	AC2	B	1096	1109	Right-handed alpha
Helix 21	AC3	B	1132	1154	Right-handed alpha
Helix 22	AC4	B	1161	1186	Right-handed alpha
Helix 23	AC5	B	1189	1203	Right-handed alpha
Helix 24	AC6	B	1206	1219	Right-handed alpha
Helix 25	AC7	B	1258	1276	Right-handed alpha
Helix 26	AC8	B	1278	1291	Right-handed alpha
Helix 27	AC9	B	1301	1319	Right-handed alpha
Helix 28	AD1	B	1353	1357	Right-handed 310
Helix 29	AD2	B	1405	1414	Right-handed alpha
Helix 30	AD3	C	1497	1507	Right-handed alpha
Helix 31	AD4	C	1584	1592	Right-handed alpha
Helix 32	AD5	C	1611	1619	Right-handed alpha
Helix 33	AD6	C	1714	1720	Right-handed alpha
Helix 34	AD7	C	1723	1740	Right-handed alpha

There are 23 sheets in PDB entry 5JPN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	87	first strand
Strand 2	A	37	44	anti-parallel
Strand 3	A	22	28	anti-parallel
Strand 4	A	652	655	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	32	first strand
Strand 2	A	128	135	parallel
Strand 3	A	107	113	anti-parallel
Strand 4	A	51	59	anti-parallel
Strand 5	A	72	77	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	145	first strand
Strand 2	A	155	163	anti-parallel
Strand 3	A	197	203	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	227	233	parallel
Strand 3	A	211	219	anti-parallel
Strand 4	A	174	179	anti-parallel
Strand 5	A	185	191	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	241	247	first strand
Strand 2	A	263	270	anti-parallel
Strand 3	A	309	313	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	251	253	first strand
Strand 2	A	352	363	parallel
Strand 3	A	337	346	anti-parallel
Strand 4	A	278	288	anti-parallel
Strand 5	A	291	304	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	370	first strand
Strand 2	A	384	392	anti-parallel
Strand 3	A	396	397	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	370	first strand
Strand 2	A	384	392	anti-parallel
Strand 3	A	430	435	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	424	first strand
Strand 2	A	402	410	anti-parallel
Strand 3	A	443	450	anti-parallel
Strand 4	A	456	463	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	476	first strand
Strand 2	A	488	496	anti-parallel
Strand 3	A	527	532	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	514	522	first strand
Strand 2	A	504	511	anti-parallel
Strand 3	A	540	549	anti-parallel
Strand 4	A	552	561	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	571	579	first strand
Strand 2	A	585	593	anti-parallel
Strand 3	B	792	799	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	786	789	first strand
Strand 2	A	597	605	anti-parallel
Strand 3	B	806	814	anti-parallel
Strand 4	B	818	821	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	786	789	first strand
Strand 2	A	597	605	anti-parallel
Strand 3	B	806	814	anti-parallel
Strand 4	B	825	827	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	833	836	first strand
Strand 2	B	854	857	anti-parallel
Strand 3	B	893	896	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	843	844	first strand
Strand 2	B	924	934	parallel
Strand 3	B	908	917	anti-parallel
Strand 4	B	863	869	anti-parallel
Strand 5	B	884	889	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	875	876	first strand
Strand 2	B	899	903	anti-parallel
Strand 3	B	848	851	anti-parallel
Strand 4	C	1546	1547	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	938	948	first strand
Strand 2	B	1376	1386	anti-parallel
Strand 3	B	975	981	anti-parallel
Strand 4	B	1358	1361	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	957	960	first strand
Strand 2	B	1366	1372	anti-parallel
Strand 3	B	1326	1335	anti-parallel
Strand 4	B	1338	1347	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1222	1224	first strand
Strand 2	B	1227	1229	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1397	1403	first strand
Strand 2	C	1465	1474	anti-parallel
Strand 3	C	1534	1542	anti-parallel
Strand 4	C	1494	1496	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1514	1518	first strand
Strand 2	C	1521	1526	anti-parallel
Strand 3	C	1484	1489	anti-parallel
Strand 4	C	1552	1558	anti-parallel
Strand 5	C	1565	1570	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1597	1599	first strand
Strand 2	C	1708	1711	parallel
Strand 3	C	1682	1686	anti-parallel
Strand 4	C	1626	1637	anti-parallel
Strand 5	C	1640	1652	anti-parallel
Strand 6	C	1664	1670	anti-parallel
Strand 7	C	1700	1702	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5JPN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5JPN