Analysis of interatomic Contacts of Structural Units in PDB entry:
5JPO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JPO entry

There are 5 chains in PDB entry 5JPO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0GLN 215
B
 ALA 0ALA 214
C
 ALA 0ALA 214
D
 GLY -1MET 213
E
 GLY -1ASN 30
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 5JPO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 26Right-handed alpha
Helix 2
AA2
A
42 45Right-handed 310
Helix 3
AA3
A
46 53Right-handed alpha
Helix 4
AA4
A
71 79Right-handed alpha
Helix 5
AA5
A
81 86Right-handed alpha
Helix 6
AA6
A
88 106Right-handed alpha
Helix 7
AA7
A
106 118Right-handed alpha
Helix 8
AA8
A
124 146Right-handed alpha
Helix 9
AA9
A
158 175Right-handed alpha
Helix 10
AB1
A
177 182Right-handed alpha
Helix 11
AB2
A
184 196Right-handed alpha
Helix 12
AB3
A
197 205Right-handed alpha
Helix 13
AB4
B
12 26Right-handed alpha
Helix 14
AB5
B
42 45Right-handed 310
Helix 15
AB6
B
46 53Right-handed alpha
Helix 16
AB7
B
71 80Right-handed alpha
Helix 17
AB8
B
81 86Right-handed alpha
Helix 18
AB9
B
88 106Right-handed alpha
Helix 19
AC1
B
106 118Right-handed alpha
Helix 20
AC2
B
124 146Right-handed alpha
Helix 21
AC3
B
158 175Right-handed alpha
Helix 22
AC4
B
177 182Right-handed alpha
Helix 23
AC5
B
184 196Right-handed alpha
Helix 24
AC6
B
197 205Right-handed alpha
Helix 25
AC7
C
12 26Right-handed alpha
Helix 26
AC8
C
46 53Right-handed alpha
Helix 27
AC9
C
71 80Right-handed alpha
Helix 28
AD1
C
81 86Right-handed alpha
Helix 29
AD2
C
88 106Right-handed alpha
Helix 30
AD3
C
106 115Right-handed alpha
Helix 31
AD4
C
124 146Right-handed alpha
Helix 32
AD5
C
147 149Right-handed 310
Helix 33
AD6
C
158 175Right-handed alpha
Helix 34
AD7
C
177 182Right-handed alpha
Helix 35
AD8
C
184 196Right-handed alpha
Helix 36
AD9
C
197 205Right-handed alpha
Helix 37
AE1
D
12 26Right-handed alpha
Helix 38
AE2
D
46 53Right-handed alpha
Helix 39
AE3
D
71 80Right-handed alpha
Helix 40
AE4
D
81 86Right-handed alpha
Helix 41
AE5
D
88 106Right-handed alpha
Helix 42
AE6
D
106 115Right-handed alpha
Helix 43
AE7
D
116 122Right-handed alpha
Helix 44
AE8
D
126 146Right-handed alpha
Helix 45
AE9
D
158 175Right-handed alpha
Helix 46
AF1
D
177 182Right-handed alpha
Helix 47
AF2
D
184 196Right-handed alpha
Helix 48
AF3
D
197 205Right-handed alpha
Helix 49
AF4
E
0 10Right-handed alpha
Helix 50
AF5
E
14 28Right-handed alpha
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There are 5 sheets in PDB entry 5JPO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 32first strand
Strand 2
A
3 7parallel
Strand 3
A
60 63anti-parallel
Strand 4
A
68 69anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 32first strand
Strand 2
B
3 7parallel
Strand 3
B
60 63anti-parallel
Strand 4
B
68 70anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 32first strand
Strand 2
C
3 7parallel
Strand 3
C
60 63anti-parallel
Strand 4
C
68 70anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 32first strand
Strand 2
D
3 7parallel
Strand 3
D
60 63anti-parallel
Strand 4
D
68 70anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
37 39first strand
Strand 2
D
42 44anti-parallel
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