Analysis of interatomic Contacts of Structural Units in PDB entry:
5JPT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JPT entry

There are 2 chains in PDB entry 5JPT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3ARG 749
B
 SER 3VAL 747
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 5JPT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 34Right-handed alpha
Helix 2
AA2
A
59 68Right-handed alpha
Helix 3
AA3
A
80 91Right-handed alpha
Helix 4
AA4
A
92 97Right-handed 310
Helix 5
AA5
A
98 109Right-handed alpha
Helix 6
AA6
A
121 135Right-handed alpha
Helix 7
AA7
A
149 164Right-handed alpha
Helix 8
AA8
A
193 203Right-handed alpha
Helix 9
AA9
A
216 220Right-handed 310
Helix 10
AB1
A
221 238Right-handed alpha
Helix 11
AB2
A
252 259Right-handed alpha
Helix 12
AB3
A
285 301Right-handed alpha
Helix 13
AB4
A
312 333Right-handed alpha
Helix 14
AB5
A
349 354Right-handed alpha
Helix 15
AB6
A
355 358Right-handed 310
Helix 16
AB7
A
377 380Right-handed 310
Helix 17
AB8
A
417 427Right-handed alpha
Helix 18
AB9
A
428 430Right-handed 310
Helix 19
AC1
A
441 447Right-handed alpha
Helix 20
AC2
A
455 459Right-handed 310
Helix 21
AC3
A
462 472Right-handed alpha
Helix 22
AC4
A
487 501Right-handed alpha
Helix 23
AC5
A
511 518Right-handed alpha
Helix 24
AC6
A
523 532Right-handed alpha
Helix 25
AC7
A
533 537Right-handed 310
Helix 26
AC8
A
538 550Right-handed alpha
Helix 27
AC9
A
561 570Right-handed alpha
Helix 28
AD1
A
577 590Right-handed alpha
Helix 29
AD2
A
591 598Right-handed alpha
Helix 30
AD3
A
598 606Right-handed alpha
Helix 31
AD4
A
609 630Right-handed alpha
Helix 32
AD5
A
643 657Right-handed alpha
Helix 33
AD6
A
674 676Right-handed 310
Helix 34
AD7
A
714 722Right-handed alpha
Helix 35
AD8
A
727 731Right-handed 310
Helix 36
AD9
A
734 746Right-handed alpha
Helix 37
AE1
B
18 32Right-handed alpha
Helix 38
AE2
B
59 68Right-handed alpha
Helix 39
AE3
B
80 91Right-handed alpha
Helix 40
AE4
B
92 97Right-handed 310
Helix 41
AE5
B
98 109Right-handed alpha
Helix 42
AE6
B
121 135Right-handed alpha
Helix 43
AE7
B
149 164Right-handed alpha
Helix 44
AE8
B
193 203Right-handed alpha
Helix 45
AE9
B
216 220Right-handed 310
Helix 46
AF1
B
221 238Right-handed alpha
Helix 47
AF2
B
253 259Right-handed alpha
Helix 48
AF3
B
285 301Right-handed alpha
Helix 49
AF4
B
312 335Right-handed alpha
Helix 50
AF5
B
349 354Right-handed alpha
Helix 51
AF6
B
355 358Right-handed 310
Helix 52
AF7
B
377 380Right-handed 310
Helix 53
AF8
B
417 427Right-handed alpha
Helix 54
AF9
B
428 430Right-handed 310
Helix 55
AG1
B
441 448Right-handed alpha
Helix 56
AG2
B
455 460Right-handed alpha
Helix 57
AG3
B
462 472Right-handed alpha
Helix 58
AG4
B
487 501Right-handed alpha
Helix 59
AG5
B
511 518Right-handed alpha
Helix 60
AG6
B
523 532Right-handed alpha
Helix 61
AG7
B
533 537Right-handed 310
Helix 62
AG8
B
538 550Right-handed alpha
Helix 63
AG9
B
562 571Right-handed alpha
Helix 64
AH1
B
577 590Right-handed alpha
Helix 65
AH2
B
591 596Right-handed alpha
Helix 66
AH3
B
598 607Right-handed alpha
Helix 67
AH4
B
609 630Right-handed alpha
Helix 68
AH5
B
643 657Right-handed alpha
Helix 69
AH6
B
714 722Right-handed alpha
Helix 70
AH7
B
727 731Right-handed 310
Helix 71
AH8
B
734 744Right-handed alpha
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There are 8 sheets in PDB entry 5JPT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
172 176anti-parallel
Strand 3
A
188 192parallel
Strand 4
A
142 147parallel
Strand 5
A
209 214parallel
Strand 6
A
242 247parallel
Strand 7
A
111 115parallel
Strand 8
A
264 266parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 277first strand
Strand 2
A
434 438parallel
Strand 3
A
388 393parallel
Strand 4
A
305 309parallel
Strand 5
A
370 375parallel
Strand 6
A
339 344parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 403first strand
Strand 2
A
408 415anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
660 663first strand
Strand 2
A
670 672anti-parallel
Strand 3
A
678 681anti-parallel
Strand 4
A
705 712parallel
Strand 5
A
693 701anti-parallel
Strand 6
A
660 663anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 181first strand
Strand 2
B
172 176anti-parallel
Strand 3
B
188 192parallel
Strand 4
B
142 147parallel
Strand 5
B
209 214parallel
Strand 6
B
242 247parallel
Strand 7
B
111 115parallel
Strand 8
B
264 266parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 277first strand
Strand 2
B
434 438parallel
Strand 3
B
388 393parallel
Strand 4
B
305 309parallel
Strand 5
B
370 375parallel
Strand 6
B
339 344parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
396 403first strand
Strand 2
B
408 415anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
660 662first strand
Strand 2
B
670 672anti-parallel
Strand 3
B
678 681anti-parallel
Strand 4
B
705 712parallel
Strand 5
B
693 701anti-parallel
Strand 6
B
660 662anti-parallel
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