Analysis of interatomic Contacts of Structural Units in PDB entry:
5JQ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5JQ6 entry

There are 3 chains in PDB entry 5JQ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 219CYS 541
H
 GLN 1GLU 220
L
 ASP 1ARG 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5JQ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
232 236Right-handed 310
Helix 2
AA2
A
250 254Right-handed 310
Helix 3
AA3
A
321 324Right-handed 310
Helix 4
AA4
A
440 444Right-handed 310
Helix 5
AA5
A
451 455Right-handed 310
Helix 6
AA6
A
459 462Right-handed 310
Helix 7
AA7
H
28 32Right-handed 310
Helix 8
AA8
H
63 65Right-handed 310
Helix 9
AA9
H
73 75Right-handed 310
Helix 10
AB1
H
86 90Right-handed 310
Helix 11
AB2
H
100 104Right-handed 310
Helix 12
AB3
H
164 166Right-handed 310
Helix 13
AB4
H
209 212Right-handed 310
Helix 14
AB5
L
85 89Right-handed 310
Helix 15
AB6
L
126 131Right-handed alpha
Helix 16
AB7
L
187 193Right-handed alpha
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There are 19 sheets in PDB entry 5JQ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 244first strand
Strand 2
A
257 264anti-parallel
Strand 3
A
326 339anti-parallel
Strand 4
A
283 284anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 244first strand
Strand 2
A
257 264anti-parallel
Strand 3
A
326 339anti-parallel
Strand 4
A
533 540anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
248 249first strand
Strand 2
A
359 367parallel
Strand 3
A
348 356anti-parallel
Strand 4
A
274 278anti-parallel
Strand 5
A
315 319anti-parallel
Strand 6
A
305 309anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 375first strand
Strand 2
A
378 388anti-parallel
Strand 3
A
393 400anti-parallel
Strand 4
A
487 495anti-parallel
Strand 5
A
424 425anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 375first strand
Strand 2
A
378 388anti-parallel
Strand 3
A
393 400anti-parallel
Strand 4
A
487 495anti-parallel
Strand 5
A
432 437anti-parallel
Strand 6
A
456 457anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 468first strand
Strand 2
A
471 475anti-parallel
Strand 3
A
407 416anti-parallel
Strand 4
A
482 483anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
463 468first strand
Strand 2
A
471 475anti-parallel
Strand 3
A
407 416anti-parallel
Strand 4
A
505 512anti-parallel
Strand 5
A
518 525anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
77 82anti-parallel
Strand 4
H
67 72anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
115 119parallel
Strand 3
H
91 97anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
46 51anti-parallel
Strand 6
H
57 59anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
115 119parallel
Strand 3
H
91 97anti-parallel
Strand 4
H
110 111anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
128 132first strand
Strand 2
H
146 153anti-parallel
Strand 3
H
184 190anti-parallel
Strand 4
H
171 173anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
128 132first strand
Strand 2
H
146 153anti-parallel
Strand 3
H
184 190anti-parallel
Strand 4
H
177 178anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
159 162first strand
Strand 2
H
203 208anti-parallel
Strand 3
H
213 218anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 5first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
76 81anti-parallel
Strand 4
L
68 73anti-parallel
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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
107 111parallel
Strand 3
L
91 96anti-parallel
Strand 4
L
39 44anti-parallel
Strand 5
L
51 55anti-parallel
Strand 6
L
59 60anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
107 111parallel
Strand 3
L
91 96anti-parallel
Strand 4
L
102 103anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
30 31first strand
Strand 2
L
36 37anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
119 123first strand
Strand 2
L
135 144anti-parallel
Strand 3
L
178 186anti-parallel
Strand 4
L
164 168anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
150 154first strand
Strand 2
L
197 202anti-parallel
Strand 3
L
210 214anti-parallel
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